Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1075 ATGACCAAAACAACAGAGGACCAACAAGGACAAGAAGAAGTAGAAGAAGACGAGCAGCTCTTCTACGAATCCCTCGATCGCATCCTCTCTTCCTCCTGCTCTTGCTCTACTTCCAATTCAGACAACGACGAAAACAAAGATTCCTCCTCCTCCTCCACCAATCATTATGCCGCTTCGAAATACGACATCTGGGTCTCTGAACCCTCCTCTGTCTCCGAGCGCCGGAGCCACCTTCTCCGATCAATGGGTCTCTTCTCCAATGATAATGACCGGAAAAACCATGTAGCTCTTAAATCTAAGCTGCCTTGCGGAAAACAGTGTACTAATGATGGGGTAATAGTAGATAAGGTTGATAGTGATCAAGTGTGTACTATTAAAGATCTTGACAATGGCAAAGAGTTTCTACTGAATGAGATTAGGGAAGATGGTATGTGGAATACAGTCAAGGAAGTGGGTACAGGAAGGCAGTTGACCATGGAGGAGTTTGAGACGTGTGTGGGACATTCTCCTATCGTTCAAGAATTGATGAGGAGACAAAATGTAGAAGATGGTAATAACAAGAAGGTTAATTTGGACTCGAGTGCAAATTTTTTTAGTGGAGGGGGTCAAAATGTGAAATCAAAAAAGAAAATGGGTGGGTGGTTTTGGAGTCTAAAGAACACCGTGATGACTAAAGAGAGACGGAGTAGTGATGAGAGAGGAGACACCTCCTCAGAGAAAGGTGGGGCCCGGTGGAGCTCGGCTACGGACGATAGTCAGGACATTTCGGTTAATGGCCCGGAGCCGGAAAGGGTACGGGTTAGACAGTTTTGTAAGACATCAAAAGACCTAACTGCCCTTTACAAGAGTCAAGAGATATCCGCTCATTCCGGATCGATTTGGAGTATGAAGTTTAGCTTGGACGGTAAGTATCTTGCTAGTGCGGGTGAAGATCGGGTTATTCATGTTTGGAAAGTTTTGGAATTGGATAAAACTGAAGCAGGGAATTTGAATCTTCTTGCCTTAGCTAATGGTTCGCCTGAAGTGATGTCATTGTATCCTAATATGGATTATAACTCTGTGGAGAAGAAGAGATGGGGGAGGCCTTCTATTAGCCGTAAGTCGTTGAGTTTGGACCAAGTTGTTGTGCCGGAAACTGTCTTTGGGCTTTCGGAAAAACCTGCTTTTTCGTTCGAGGGTCATTTTGATGATGTACTTGACCTCTCGTGGTCCCAGTCTCAGTTACTCTCATCTTCAATGGACAAAACCGTGCGATTATGGGACTTGTCTAGCAAATCTTGTGTCAAAATTTTTTCACACAGTGATTATGTTACTTGCATCCAGTTTAATCCAATTGATGATAGATACTTCATAAGTGGGTCCCTTGATGCTAAAGTACGTATATGGAGTATCCCGGATCGTCAGGTTGTTGATTGGAGTGATCTCCATGAGATGGTTACTGCTGCTTGCTATACTCCAGATGGCCAGGGCGCATTGGTCGGTTCATACAAGGGAAGCTGTCATATGTACAATACATCTGAGAATAAGTTGCAACAGAAAGGTGAAGTGAATCTTCAGAATAGTAAGAAGAAATCTCATTACAAGAAGATCAACGGTTTCCAATTTTCTCCAGGATGTTCATCCGAGGTATTAATCACATCGGCAGATTCAAGAATCAGAGTTGTTGATGGTCTTGATCTGGTTCATAAGTTCAAAGGGTTCCGTAACACGAACAGCCAAATCTCGGCCCACCTCACGGCTAACGGTAAATATGTGGTCTGTGGCAGTGAGGATTCTCATGTTTACATATGGAAATATGAGCCTGATTCTCGGCACAGCAGGAATAAAAGCATCACGACCGCACACTCTTACGAGCATTTCCACTGTCAAGATGTCTCCTTAGCTATCCCATGGCATGGTTTTTCTAACCATAATCCCAAGGCGGGACCCATCGATGAAATCTCCACCACCACTTACCATCCTCCTACACCTGTCGAGGAGGAAGAAGAGGTGGGCCCGCCACGATCGGCCCATGGGCCCATTGGCCCTCCTCGTGGAATCATTTCTAGTGCGACAAACAGTTACTTCTTTGATAGAATCTCGGCGACATGGCCTGAGGAGAAACTTGTCCTGCCTCTTCGTGTGAGTGTGGATGATCAGAACATGCCGGCTTGGGGTATGGTGATTGTAACGGCCAGTTTGAGAGGGGAGATTCGAACTTTTCAAAACTTTGGGTTACCGGTTCGACTATAA 2232 45.03 MTKTTEDQQGQEEVEEDEQLFYESLDRILSSSCSCSTSNSDNDENKDSSSSSTNHYAASKYDIWVSEPSSVSERRSHLLRSMGLFSNDNDRKNHVALKSKLPCGKQCTNDGVIVDKVDSDQVCTIKDLDNGKEFLLNEIREDGMWNTVKEVGTGRQLTMEEFETCVGHSPIVQELMRRQNVEDGNNKKVNLDSSANFFSGGGQNVKSKKKMGGWFWSLKNTVMTKERRSSDERGDTSSEKGGARWSSATDDSQDISVNGPEPERVRVRQFCKTSKDLTALYKSQEISAHSGSIWSMKFSLDGKYLASAGEDRVIHVWKVLELDKTEAGNLNLLALANGSPEVMSLYPNMDYNSVEKKRWGRPSISRKSLSLDQVVVPETVFGLSEKPAFSFEGHFDDVLDLSWSQSQLLSSSMDKTVRLWDLSSKSCVKIFSHSDYVTCIQFNPIDDRYFISGSLDAKVRIWSIPDRQVVDWSDLHEMVTAACYTPDGQGALVGSYKGSCHMYNTSENKLQQKGEVNLQNSKKKSHYKKINGFQFSPGCSSEVLITSADSRIRVVDGLDLVHKFKGFRNTNSQISAHLTANGKYVVCGSEDSHVYIWKYEPDSRHSRNKSITTAHSYEHFHCQDVSLAIPWHGFSNHNPKAGPIDEISTTTYHPPTPVEEEEEVGPPRSAHGPIGPPRGIISSATNSYFFDRISATWPEEKLVLPLRVSVDDQNMPAWGMVIVTASLRGEIRTFQNFGLPVRL 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9015738 9019612 - Conep14aG0109600.1 Cone14ag1075 452924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1075 743 ProSiteProfiles Trp-Asp (WD) repeats profile. 430 464 IPR001680 GO:0005515(InterPro)
Cone14ag1075 743 Pfam WD domain, G-beta repeat 284 317 IPR001680 GO:0005515(InterPro)
Cone14ag1075 743 Pfam WD domain, G-beta repeat 426 463 IPR001680 GO:0005515(InterPro)
Cone14ag1075 743 Pfam WD domain, G-beta repeat 574 597 IPR001680 GO:0005515(InterPro)
Cone14ag1075 743 Pfam WD domain, G-beta repeat 386 421 IPR001680 GO:0005515(InterPro)
Cone14ag1075 743 MobiDBLite consensus disorder prediction 240 256 - -
Cone14ag1075 743 Gene3D - 165 341 IPR015943 GO:0005515(InterPro)
Cone14ag1075 743 ProSiteProfiles Trp-Asp (WD) repeats profile. 286 319 IPR001680 GO:0005515(InterPro)
Cone14ag1075 743 PANTHER WD REPEAT DOMAIN 44 20 743 IPR040324 -
Cone14ag1075 743 MobiDBLite consensus disorder prediction 655 677 - -
Cone14ag1075 743 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 430 464 - -
Cone14ag1075 743 SMART WD40_4 515 556 IPR001680 GO:0005515(InterPro)
Cone14ag1075 743 SMART WD40_4 279 318 IPR001680 GO:0005515(InterPro)
Cone14ag1075 743 SMART WD40_4 384 421 IPR001680 GO:0005515(InterPro)
Cone14ag1075 743 SMART WD40_4 557 598 IPR001680 GO:0005515(InterPro)
Cone14ag1075 743 SMART WD40_4 466 504 IPR001680 GO:0005515(InterPro)
Cone14ag1075 743 SMART WD40_4 424 463 IPR001680 GO:0005515(InterPro)
Cone14ag1075 743 FunFam WD repeat-containing protein 44 372 637 - -
Cone14ag1075 743 MobiDBLite consensus disorder prediction 225 239 - -
Cone14ag1075 743 MobiDBLite consensus disorder prediction 225 261 - -
Cone14ag1075 743 ProSitePatterns Trp-Asp (WD) repeats signature. 408 422 IPR019775 -
Cone14ag1075 743 SUPERFAMILY WD40 repeat-like 281 602 IPR036322 GO:0005515(InterPro)
Cone14ag1075 743 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 391 424 - -
Cone14ag1075 743 Gene3D - 372 628 IPR015943 GO:0005515(InterPro)
Cone14ag1075 743 PRINTS G protein beta WD-40 repeat signature 450 464 IPR020472 -
Cone14ag1075 743 PRINTS G protein beta WD-40 repeat signature 305 319 IPR020472 -
Cone14ag1075 743 PRINTS G protein beta WD-40 repeat signature 408 422 IPR020472 -
Cone14ag1075 743 MobiDBLite consensus disorder prediction 31 54 - -
Cone14ag1075 743 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 430 IPR001680 GO:0005515(InterPro)
Cone14ag1075 743 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 286 319 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1075 K20241 - - mdm:103413286 837.025
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1075 Cone-Chr14:9015738 Cone3ag0335 Cone-Chr3:1701167 2.08E-157 dispersed
Cone14ag1075 Cone-Chr14:9015738 Cone15ag1068 Cone-Chr15:8821622 0 wgd
Cone14ag1075 Cone-Chr14:9015738 Cone6ag0130 Cone-Chr6:637844 1.53E-287 wgd
Cone14ag1075 Cone-Chr14:9015738 Cone9ag0154 Cone-Chr9:685015 1.12E-279 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030059 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2