Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1077 ATGGAGCTAGAAATGGATGATATAGAAGCTAACAATTATATGAAGGAAGACCCGGAATCATCGGCCGTGTTTCGGAAAGCTCATCATCCTGTTACATTACTGTTCGTGGACATAATTTACAAGGTCAAAACCCACAAATCTTCAGGGTTTCTTAAAAAGACCATAAAATCTGAAGAGAAAATCATTCTAAAAGGTGTCACGGGCATAGTTTATCCCGGTGAAATGCTTGTGATGCTCGGCCCATCTGGTAGCGCCAAAACAACCTTGTTAACAGCACTAGGAGGCCGTCTCAGGGGAAAACTCGAAGGAACCATAACATATAATAGCAAACCATTTTCAAATCACATGAAGCGAAACACCGGATTTGTTACACAAGATGACATTCTTTTGCCCCATTTAACAGTTGCTGAAACCTTAATTTTCACAGCTCTTTTGAGATTACCAAATAGTCTTAGTAAAGAAGATAAAATTACTAATGCGGAGGCCGTGATTAATAAACTTGGATTGAATAAATGCAAGAACAACATAATTGGTGGGGAATCACTTAGAGGAGTTTCTGGGGGAGAGAGGAAGAGGGTTAGCATAGGGCAGGAGATATTGATGAACCCTAGTTTGCTTTTGTTAGATGAACCCACATCCGGTCTTGATTCGACCACAGCTCAGAGAATTGTTTCTACTTTGTGGGATTTGGCTAATGGAGGAAGAACAATTGTGATGACAATTCACCAGCCTTCAAGTAGGCTTTTCTATATGTTTCATAAGGTTTTGTTGCTCTCGGATGGGAATCCTTTGTATTTTGGAAAGGGTTCAGAAGTTGTGGCTTATTTTTCAAGCATTGGCTATTCTTCTTCATTTGCAATGAATCCCTCGGATTTCTTATTGGACCTTGCAAATGGGGTACTGGCACAGGAAGGGTCACATGATAATCAAGATATGGTCAAGGAGGCTTTGGTTTCCTCATATAAATACAATATTTATGGAAATTTGAAATCTCAAGTTGAAGAGATCATTAGCCATCAATTTGAAGAGGAAGAAGAAGAGAAGGAATTTGAGCAATGGACAACCAGTTGGTGGCAACAATTCATTGTGTTATTAAGAAGAGGAGTCAAAGAAAGTAGGTATGAAACCTTCTCTGCCCTCAAAATTGCTCAAGTCCTGTTCACATCTCTCGTTGTAGGGCTCCTATGGTGGCAGTCAAGTGTTTCCCACTTACAAGATCAGATTGGATTTCTTTACTTTTCGATAGGATTTTGGGGTTACTTTGCGCTATTCAGAGCAATTTTCACCTTCCCGGACGAACGGGAAATACTCAAAAAAGAAAGATCTTCCGGAATGTACCGACTCTCCTCCTACTTCATGTCAAAAGCCATTGCCGATCTTCCCATGGAGCTCGTCCTCCCCACAGGTTATGTCATCATGACATACTTTATGGGAGGTCTCAAATTGAACTCTTCAAACTTCTTCTACACTTTATTCACCATTCTATTCCATGTACTAGTATCTCAAGGTTTTGGGCTTGCTGTTGGGGCAGTAATAATGGACACAAAGTCAGCTACAACCCTTGGATCAGTGATCATGCTAATATTTCGTCTAGCTGGTGGGTATTATGTGCAACATGTGCCTTCATTTATAGCTTGGATCAAGTACATTTCTACTACTCATTACACCTACAAGCTCCTTTTGGGGTCCCAGTACAGATACTATGATAAATACCCATGTGAAAATGGGGATGGGTTTTGTAATATTGGTGAGTTTCCTGGTATAAAAGAAGTTGGGCTTGGTGGGCAAGTTATTGCAGCTGTTGCTTTAGGTATAATGCTTGTGGGCTATCGTCTTATTGCTTATCTTGCTCTTGTGAGAATTGGGGAGATAAGGAAATTAGAATAG 1887 40.33 MELEMDDIEANNYMKEDPESSAVFRKAHHPVTLLFVDIIYKVKTHKSSGFLKKTIKSEEKIILKGVTGIVYPGEMLVMLGPSGSAKTTLLTALGGRLRGKLEGTITYNSKPFSNHMKRNTGFVTQDDILLPHLTVAETLIFTALLRLPNSLSKEDKITNAEAVINKLGLNKCKNNIIGGESLRGVSGGERKRVSIGQEILMNPSLLLLDEPTSGLDSTTAQRIVSTLWDLANGGRTIVMTIHQPSSRLFYMFHKVLLLSDGNPLYFGKGSEVVAYFSSIGYSSSFAMNPSDFLLDLANGVLAQEGSHDNQDMVKEALVSSYKYNIYGNLKSQVEEIISHQFEEEEEEKEFEQWTTSWWQQFIVLLRRGVKESRYETFSALKIAQVLFTSLVVGLLWWQSSVSHLQDQIGFLYFSIGFWGYFALFRAIFTFPDEREILKKERSSGMYRLSSYFMSKAIADLPMELVLPTGYVIMTYFMGGLKLNSSNFFYTLFTILFHVLVSQGFGLAVGAVIMDTKSATTLGSVIMLIFRLAGGYYVQHVPSFIAWIKYISTTHYTYKLLLGSQYRYYDKYPCENGDGFCNIGEFPGIKEVGLGGQVIAAVALGIMLVGYRLIAYLALVRIGEIRKLE 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9027083 9029704 + Conep14aG0109800.1 Cone14ag1077 452926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1077 628 Pfam ABC-2 type transporter 359 565 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Cone14ag1077 628 Pfam ABC transporter 63 213 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone14ag1077 628 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 33 285 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone14ag1077 628 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 31 615 IPR050352 GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cone14ag1077 628 Pfam ABC-2 type transporter 242 358 IPR043926 GO:0140359(InterPro)
Cone14ag1077 628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 279 IPR027417 -
Cone14ag1077 628 SMART AAA_5 72 262 IPR003593 GO:0016887(InterPro)
Cone14ag1077 628 ProSitePatterns ABC transporters family signature. 185 199 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone14ag1077 628 Gene3D - 51 282 IPR027417 -
Cone14ag1077 628 FunFam ABC transporter G family member 22 50 279 - -
Cone14ag1077 628 CDD ABCG_EPDR 30 267 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1077 K05681 - - vvi:100265848 808.905
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1077 Cone-Chr14:9027083 Cone6ag0307 Cone-Chr6:1417423 2.41E-214 dispersed
Cone14ag1076 Cone-Chr14:9023130 Cone14ag1077 Cone-Chr14:9027083 7.79E-290 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g270 . . . . . . . . Cmo16g00851 . . . . . . . . . . . . . . . Cla10g00629 Cam10g0620 Cec10g0650 Cco10g0625 Clacu10g0651 Cmu10g1474 Cre10g0861 . . Cone14ag1077 . . Csa03g00613 . . . . . . . . . . . . . . . . . Cpe14g00687 . . . . . . . . . . . . . . . Lsi05g00704 . Chy06g01711 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003135 1 2 2 2 2 2 0 2 2 2 2 2 3 2 2 1 2 2 1 2 2 2 1 0 3 1 2 1 2 1 51