Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1104 ATGGCTTTGAATAATCAATCCGATTTAAACTATTGCGACAATCGTGCGTTATGTGGCCCCTATGGATATTGTAACATAAGTACTTCACCGGTCTGTAAATGTTTAAATGGGTTCAAGCCAAGAGTGCCGGATAGATGGAACTCGTTTGATAATACGGATGGGTGTGAAAGGGAGGAGCCATTGAATTGTGGGGGTGGAAATAATAGTAATAATAGTATCGGGTTTGAGAAATATACAGACTCGCAAGGGCCGGATGGGAACAGTTCTTGGGTGGATAGAAGCTTGAGTCTTGAAGAATGTAGGACTAAGTGTTTGAGTAATTGTTCTTGTTCTGCTTATGGAAATGCAGAGTTTGTCAGAGGAACTTGGAGTGGTTGTGGTCTTTGGTTTGGTGATTTGATTAATCTCAAGGCTCTTCCAGAAGGTGGGCAGGATATATATGTTCGAATGCTAGCTTCGGAAATAGTCGTAACTAAAAATTCGGAGTCAAATCGGAAGAGGACGATTGGAGTAGTAACTGGGTGTTCCATTGCTTCGATTCTTGCAATCCTATTGTTCGGTTTCTTCATATACAGGAAGAGGTCTAACTTCAGAGGCCAAGATGAGGAAAAGGAAGAATTTGAGCTTCCATCATTCGACTTATCTACGATAAGTTATGCAACTGATAACTTTTCGACCAACAATAAGCTTGGACAAGGTGGCTTTGGACCTGTATATAAGGGGAGGCTAGCCAATGGGCAGGAAATTGCAGTGAAAAGGCTTTCGAAGAATTCGGGACAAGGCATGAATGAGTTCAAAAATGAAGTGATACTATTTTCGAAACTTCAACATCGAAATCTCGTAAGGCTTCTTGGTTGTTGTCTCCAGGGAGAAGAGAAAATGCTCATTTATGAATACTTGCCTAACAAAAGCTTGGATTTCTTTATATTTGATGAAACAAAAGGGAAATTATTAGGTTGGTCCATCCGGTTCCGTATTATTTGTGGAATTGCTCGTGGGCTTCTTTATCTTCATCGGGATTCGAGATTGAGGATAATACATAGAGATCTAAAAGCAAGCAATATTTTACTTGATGGTGATATGAACCCGAAAATATCTGATTTCGGCCTTGCTAGAACTTTTGGTGGGGACCAAACAGAAGCAAGTACAAGAAGAGTGGTTGGAACATATGGATATATGGCACCGGAATATGCTATTGACGGACAATTTTCTGTAAAATCTGATGTCTTTAGTTTCGGAATTTTATTGTTAGAGATCATAAGTGGAAAGAGAAATCGGGGATTTTATCGTCCAAACCATAATGACCTTAACCTTATTGGATACGCATGGACATTGTGGAATCAAGGCAGACCAGCAGAGCTAATCGATGAAATCATTGATGACTCGTGGTCTATTTCGGAAGTTTTACGGTGCATCCATGTTGGTCTCCTATGTGCTCAACAACATCCGGAAGACCGGCCCACCATGTCATCCGTGGTCATGATGTTAGGTAGTGATAATATTGCCTTGCCTCCGCCTAAACAACCAGGTTTCTTCGTGGAGGAGGCCGGCTTTGATAATATCGAATTCCAATCTAGGGATCAATTGATTTCAGCCAACGAATTATCCGTTACAGTTCTTGAGCCTAGATAG 1632 40.93 MALNNQSDLNYCDNRALCGPYGYCNISTSPVCKCLNGFKPRVPDRWNSFDNTDGCEREEPLNCGGGNNSNNSIGFEKYTDSQGPDGNSSWVDRSLSLEECRTKCLSNCSCSAYGNAEFVRGTWSGCGLWFGDLINLKALPEGGQDIYVRMLASEIVVTKNSESNRKRTIGVVTGCSIASILAILLFGFFIYRKRSNFRGQDEEKEEFELPSFDLSTISYATDNFSTNNKLGQGGFGPVYKGRLANGQEIAVKRLSKNSGQGMNEFKNEVILFSKLQHRNLVRLLGCCLQGEEKMLIYEYLPNKSLDFFIFDETKGKLLGWSIRFRIICGIARGLLYLHRDSRLRIIHRDLKASNILLDGDMNPKISDFGLARTFGGDQTEASTRRVVGTYGYMAPEYAIDGQFSVKSDVFSFGILLLEIISGKRNRGFYRPNHNDLNLIGYAWTLWNQGRPAELIDEIIDDSWSISEVLRCIHVGLLCAQQHPEDRPTMSSVVMMLGSDNIALPPPKQPGFFVEEAGFDNIEFQSRDQLISANELSVTVLEPR 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9211550 9214606 - Conep14aG0112600.1 Cone14ag1104 452953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1104 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 345 357 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone14ag1104 543 SMART ntp_6 70 150 IPR003609 -
Cone14ag1104 543 CDD PAN_AP_plant 60 149 - -
Cone14ag1104 543 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 512 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone14ag1104 543 ProSiteProfiles PAN/Apple domain profile. 63 151 IPR003609 -
Cone14ag1104 543 Pfam Domain of unknown function (DUF3403) 498 543 IPR021820 GO:0004674(InterPro)
Cone14ag1104 543 SMART serkin_6 224 496 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone14ag1104 543 Pfam PAN-like domain 74 135 IPR003609 -
Cone14ag1104 543 SUPERFAMILY Protein kinase-like (PK-like) 207 520 IPR011009 -
Cone14ag1104 543 Pfam S-locus glycoprotein domain 9 41 IPR000858 GO:0048544(InterPro)
Cone14ag1104 543 Gene3D Transferase(Phosphotransferase) domain 1 300 502 - -
Cone14ag1104 543 Pfam Protein tyrosine and serine/threonine kinase 226 494 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone14ag1104 543 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 300 504 - -
Cone14ag1104 543 CDD STKc_IRAK 230 496 - -
Cone14ag1104 543 ProSiteProfiles Protein kinase domain profile. 224 503 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone14ag1104 543 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 190 299 - -
Cone14ag1104 543 Gene3D Phosphorylase Kinase; domain 1 198 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1104 Cone-Chr14:9211550 Cone15ag1116 Cone-Chr15:9119105 9.87E-272 dispersed
Cone14ag1104 Cone-Chr14:9211550 Cone14ag1106 Cone-Chr14:9218777 6.81E-266 proximal
Cone10ag1305 Cone-Chr10:10183519 Cone14ag1104 Cone-Chr14:9211550 2.89E-136 wgd
Cone12ag1413 Cone-Chr12:10327058 Cone14ag1104 Cone-Chr14:9211550 1.91E-142 wgd
Cone14ag1104 Cone-Chr14:9211550 Cone15ag1114 Cone-Chr15:9112166 0 wgd
Cone14ag1104 Cone-Chr14:9211550 Cone3ag1372 Cone-Chr3:32704170 1.30E-45 wgd
Cone14ag1104 Cone-Chr14:9211550 Cone6ag1065 Cone-Chr6:6254890 1.87E-193 wgd
Cone14ag1104 Cone-Chr14:9211550 Cone6ag0103 Cone-Chr6:501150 1.92E-223 wgd
Cone14ag1104 Cone-Chr14:9211550 Cone9ag1036 Cone-Chr9:5546112 6.06E-152 wgd
Cone14ag1104 Cone-Chr14:9211550 Cone9ag0121 Cone-Chr9:528827 6.82E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82108 PF00651 BTB 5.30E-26 CL0033 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1104 - - - 0.0