Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1110 ATGGCTGATGAGTTTAATACAAGTGGAAACTGGTGGGAAGCTTCTAGAAGTAGATATGAAAGTGGGATGTCACCACCCTCCTCTTCAACACTGAGTAGCTTTGGTTGGCAAGGCGATATGGGGGATATAAAGGCGGCCCGGTCGACTTCTGTCGGGTCTATTTCAGTTTCGGGTACTTCTTCCATGTTTTTCCAAGATACCCAGAAGCTGCAAGGCTCCAATTCCGGTGGCGGTGGAGATCCGACTTTACATATGATGGGTTTAGGCCTCTCATCCCAAACTATAGATTGGAACCAAGCCTTAATTCGTGGAGGCGAAAAGGCGGCGGAGAGCAGTTTCCAGTCGATGCTTGAAGATCATAACATGAATCCGCGTACGAATTTTCAGCAAACTGAAACCGGACAAGTACTTCAGTGGCGATCGGAAAGGTTATTTTCTGGGGATTCTTCAACAAGGGATTTTGCACTAGATCAAGGTCATGAATTTAGTCCTCAATATAGCTCAGGGGACAGCACTGTAACATGTCAAGGTTTGAATAGTACTACTAGTACTAATTTTCAGATGGACTCATCACCAAATAACTTGTACGGAAACCCTTCGACGATATTACAAGGTTTAGCTGATCATCATCAAAATCAACAATCTTCATCAGCTTCTATGAATTATCAATTTAGTCCTCATCAATTTGGTGTGAATTCTAATGAGATCAATTTGCCATCTTCTAATAATTGGACGTCTAAACTGCCTCAATTTTTGAGAACATCATCGCCTCCAAAGCAACACAATTTACCCTTCAACAATCATAATGCTTCGTTTTGGAATAATAACGCCTCGCAAGCCGCCATGAAAGATGTCCGACCGAGCTTTTTCCCTTCTCTGCAAACCCAGTTCCATACGCCAAATTTTGATGAAAAACCAAAGCAGATAAACGCATCCGAAATTCGCGATTCGGGAACATTGATGAAGAAAAGTGGGAGTGAGACGTCTTCAAAAAGAACTCGAAATGAAACACCATCGCCATTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTTCAGCAATTGGTTTCACCTTTCGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCCATTGAATACATCAAGTTCCTCCATGAACAAGTTAGTGTCCTAAGCACTCCTTACATGAAAAGTGGAGTTGCTACACAACATCAGCAGAATGCTGAAAAAGCAAAAGATCCTGATGGACCCAAACAAGATCTTAGAAGTCGAGGACTATGTCTTGTACCTGTTTCAAGTACATTCCCAGTCACTCATGAGAGCACGGTAGATTTTTGGACACCAACGTTTGGAGGAACCTTCAGATAA 1368 42.84 MADEFNTSGNWWEASRSRYESGMSPPSSSTLSSFGWQGDMGDIKAARSTSVGSISVSGTSSMFFQDTQKLQGSNSGGGGDPTLHMMGLGLSSQTIDWNQALIRGGEKAAESSFQSMLEDHNMNPRTNFQQTETGQVLQWRSERLFSGDSSTRDFALDQGHEFSPQYSSGDSTVTCQGLNSTTSTNFQMDSSPNNLYGNPSTILQGLADHHQNQQSSSASMNYQFSPHQFGVNSNEINLPSSNNWTSKLPQFLRTSSPPKQHNLPFNNHNASFWNNNASQAAMKDVRPSFFPSLQTQFHTPNFDEKPKQINASEIRDSGTLMKKSGSETSSKRTRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYMKSGVATQHQQNAEKAKDPDGPKQDLRSRGLCLVPVSSTFPVTHESTVDFWTPTFGGTFR 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9255036 9258809 - Conep14aG0113200.1 Cone14ag1110 452959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1110 455 SMART finulus 346 390 IPR011598 GO:0046983(InterPro)
Cone14ag1110 455 MobiDBLite consensus disorder prediction 401 422 - -
Cone14ag1110 455 Gene3D - 345 410 IPR036638 GO:0046983(InterPro)
Cone14ag1110 455 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 170 434 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone14ag1110 455 MobiDBLite consensus disorder prediction 309 341 - -
Cone14ag1110 455 CDD bHLH_AtbHLH_like 341 392 IPR045239 -
Cone14ag1110 455 MobiDBLite consensus disorder prediction 309 337 - -
Cone14ag1110 455 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983(InterPro)
Cone14ag1110 455 FunFam Transcription factor bHLH123 family 345 407 - -
Cone14ag1110 455 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 398 IPR036638 GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1110 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1110 Cone-Chr14:9255036 Cone5ag1751 Cone-Chr5:12460206 2.14E-50 dispersed
Cone20ag0124 Cone-Chr20:552676 Cone14ag1110 Cone-Chr14:9255036 6.64E-31 transposed
Cone1ag0115 Cone-Chr1:641826 Cone14ag1110 Cone-Chr14:9255036 1.41E-51 wgd
Cone14ag1110 Cone-Chr14:9255036 Cone15ag1124 Cone-Chr15:9159475 1.16E-287 wgd
Cone14ag1110 Cone-Chr14:9255036 Cone6ag0101 Cone-Chr6:496023 5.16E-62 wgd
Cone14ag1110 Cone-Chr14:9255036 Cone9ag1061 Cone-Chr9:5819200 3.11E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g384 . . . . Bpe09g00206 . Bma10g00524 Bma13g00994 Cmo16g00923 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1110 Cone15ag1124 . . . . Blo07g00930 Blo10g00790 Bda05g00748 Bda12g00875 . Bpe03g00813 . . . . . . . Car04g00871 . . Cpe01g00844 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003787 2 3 2 3 2 1 2 1 1 1 1 1 2 2 1 2 1 2 1 1 1 1 1 1 1 1 1 2 3 1 45