Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1113 ATGCAATACAATGGTCACCTACTCATGAGTCAATTTACAGCTCATCTTCTTGCCACTGCTGGGATGGATAAAAAAATCTGCATATGGAATGTATGGAGCAAGGATCAGAAAATTGCCCGAGTTCTTAACTCTCACACTGCTGCTGTTAAGGACGTGAAGTGGTCCCCACAAGGCCTATCCATTCTTTCTGGTGGATATGATTGTATATCAAGGCTAATTGATGTTGAGAAGGGGGTAGAAACTCATTAA 249 41.77 MQYNGHLLMSQFTAHLLATAGMDKKICIWNVWSKDQKIARVLNSHTAAVKDVKWSPQGLSILSGGYDCISRLIDVEKGVETH 82
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9274096 9274927 + Conep14aG0113500.1 Cone14ag1113 452962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1113 82 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 13 81 IPR053053 -
Cone14ag1113 82 Pfam WD domain, G-beta repeat 38 73 IPR001680 GO:0005515(InterPro)
Cone14ag1113 82 Pfam WD domain, G-beta repeat 15 30 IPR001680 GO:0005515(InterPro)
Cone14ag1113 82 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 42 82 - -
Cone14ag1113 82 SMART WD40_4 35 74 IPR001680 GO:0005515(InterPro)
Cone14ag1113 82 Gene3D - 3 82 IPR015943 GO:0005515(InterPro)
Cone14ag1113 82 ProSiteProfiles Trp-Asp (WD) repeats profile. 42 82 IPR001680 GO:0005515(InterPro)
Cone14ag1113 82 SUPERFAMILY WD40 repeat-like 14 79 IPR036322 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1113 K24742 - - rcu:8287872 118.627
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1113 Cone-Chr14:9274096 Cone15ag1127 Cone-Chr15:9184419 2.73E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g385 . . . . . . Bma10g00525 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1113 Cone15ag1127 . . . . Blo07g00929 . Bda05g00747 . . Bpe03g00812 . . . . . . . Car04g00870 . . Cpe01g00843 . . . . . . . . . . . . . . . . Chy06g01770 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008063 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 2 2 2 1 1 1 1 33