Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1119 ATGGTCTCGCCGGAAAACAGCAACTGGTTTTTCGATTATGGGTTGATTGAAGATATCCCTGTTCCAGATGCGAATTTTCCTGTGGCGAATTCTGGTTTCGCTTGTTGGCCTGTTCAAGCCCTCAATGGAGCCTCTAATATCAGCATGGAAATTGAGGGATCATTGGCAGATTCAGATGGCCCCAGGGAGTCAGGTTCGAAAAAGAGAGTTAGAGCGGAATCAAATCATGCATCTAGCTTGAAAGCGTGCAGGGAGAAGTTGCGTAGGGACAGGCTGAATGACAAGTTTCTTGAACTGGGTTCTATCTTGGAGCCTGGACGGGCACCAAAAACAGACAAGGCGGCTATATTGATCGATGCTGTCCGAATGGTGTTACAGTTACGGGGCGAAGCACAGAAGTTGAAGGACTCAAATTCAAGCCTTCAAGACAAGATCAAAGAACTCAAAGCTGAGAAGAGTGAGCTTAGGGACGAGAAGCAGAGACTGAAGGCAGAGAAGGAAAAGTTGGAGCAACAAGTGAAGTCCATGAATGTGCAACACAGCTTCTTGGCGGGCCCACCTGCAATCCCGGCGGCATTTTCTGCTGCTGCCCACCAGGGTCAGGCTCCAGGCAACAAGATGGTGCCCTTCATTGGCTACCCAGGAGTTGCCATGTGGCAGTTTATGCCTCCGGCAGCAGTGGACACCTCACAGGACCACGTGCTGCGGCCACCAGTCGCCTGA 723 50.9 MVSPENSNWFFDYGLIEDIPVPDANFPVANSGFACWPVQALNGASNISMEIEGSLADSDGPRESGSKKRVRAESNHASSLKACREKLRRDRLNDKFLELGSILEPGRAPKTDKAAILIDAVRMVLQLRGEAQKLKDSNSSLQDKIKELKAEKSELRDEKQRLKAEKEKLEQQVKSMNVQHSFLAGPPAIPAAFSAAAHQGQAPGNKMVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9321339 9323567 + Conep14aG0114200.1 Cone14ag1119 452968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1119 240 MobiDBLite consensus disorder prediction 61 77 - -
Cone14ag1119 240 MobiDBLite consensus disorder prediction 54 77 - -
Cone14ag1119 240 Gene3D arf6 gtpase in complex with a specific effector, jip4 127 180 - -
Cone14ag1119 240 Coils Coil 124 179 - -
Cone14ag1119 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983(InterPro)
Cone14ag1119 240 Gene3D - 64 126 IPR036638 GO:0046983(InterPro)
Cone14ag1119 240 PANTHER BHLH TRANSCRIPTION FACTOR 7 240 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Cone14ag1119 240 Pfam Helix-loop-helix DNA-binding domain 81 128 IPR011598 GO:0046983(InterPro)
Cone14ag1119 240 SMART finulus 82 133 IPR011598 GO:0046983(InterPro)
Cone14ag1119 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 151 IPR036638 GO:0046983(InterPro)
Cone14ag1119 240 CDD bHLH_AtILR3_like 81 156 - -
Cone14ag1119 240 FunFam Transcription factor bHLH34 67 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1212 Cone-Chr12:9455206 Cone14ag1119 Cone-Chr14:9321339 7.10E-08 dispersed
Cone14ag1119 Cone-Chr14:9321339 Cone4ag0319 Cone-Chr4:1448078 3.03E-32 dispersed
Cone1ag0107 Cone-Chr1:591227 Cone14ag1119 Cone-Chr14:9321339 1.06E-50 wgd
Cone12ag1399 Cone-Chr12:10289289 Cone14ag1119 Cone-Chr14:9321339 2.95E-73 wgd
Cone14ag1119 Cone-Chr14:9321339 Cone15ag1137 Cone-Chr15:9236738 3.34E-129 wgd
Cone14ag1119 Cone-Chr14:9321339 Cone8ag1455 Cone-Chr8:11228658 1.61E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44793 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1119 - - - 0.0