Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone14ag1119 | ATGGTCTCGCCGGAAAACAGCAACTGGTTTTTCGATTATGGGTTGATTGAAGATATCCCTGTTCCAGATGCGAATTTTCCTGTGGCGAATTCTGGTTTCGCTTGTTGGCCTGTTCAAGCCCTCAATGGAGCCTCTAATATCAGCATGGAAATTGAGGGATCATTGGCAGATTCAGATGGCCCCAGGGAGTCAGGTTCGAAAAAGAGAGTTAGAGCGGAATCAAATCATGCATCTAGCTTGAAAGCGTGCAGGGAGAAGTTGCGTAGGGACAGGCTGAATGACAAGTTTCTTGAACTGGGTTCTATCTTGGAGCCTGGACGGGCACCAAAAACAGACAAGGCGGCTATATTGATCGATGCTGTCCGAATGGTGTTACAGTTACGGGGCGAAGCACAGAAGTTGAAGGACTCAAATTCAAGCCTTCAAGACAAGATCAAAGAACTCAAAGCTGAGAAGAGTGAGCTTAGGGACGAGAAGCAGAGACTGAAGGCAGAGAAGGAAAAGTTGGAGCAACAAGTGAAGTCCATGAATGTGCAACACAGCTTCTTGGCGGGCCCACCTGCAATCCCGGCGGCATTTTCTGCTGCTGCCCACCAGGGTCAGGCTCCAGGCAACAAGATGGTGCCCTTCATTGGCTACCCAGGAGTTGCCATGTGGCAGTTTATGCCTCCGGCAGCAGTGGACACCTCACAGGACCACGTGCTGCGGCCACCAGTCGCCTGA | 723 | 50.9 | MVSPENSNWFFDYGLIEDIPVPDANFPVANSGFACWPVQALNGASNISMEIEGSLADSDGPRESGSKKRVRAESNHASSLKACREKLRRDRLNDKFLELGSILEPGRAPKTDKAAILIDAVRMVLQLRGEAQKLKDSNSSLQDKIKELKAEKSELRDEKQRLKAEKEKLEQQVKSMNVQHSFLAGPPAIPAAFSAAAHQGQAPGNKMVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 9321339 | 9323567 | + | Conep14aG0114200.1 | Cone14ag1119 | 452968 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone14ag1119 | 240 | MobiDBLite | consensus disorder prediction | 61 | 77 | - | - | |
Cone14ag1119 | 240 | MobiDBLite | consensus disorder prediction | 54 | 77 | - | - | |
Cone14ag1119 | 240 | Gene3D | arf6 gtpase in complex with a specific effector, jip4 | 127 | 180 | - | - | |
Cone14ag1119 | 240 | Coils | Coil | 124 | 179 | - | - | |
Cone14ag1119 | 240 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 76 | 127 | IPR011598 | GO:0046983(InterPro) | |
Cone14ag1119 | 240 | Gene3D | - | 64 | 126 | IPR036638 | GO:0046983(InterPro) | |
Cone14ag1119 | 240 | PANTHER | BHLH TRANSCRIPTION FACTOR | 7 | 240 | IPR044818 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro) | |
Cone14ag1119 | 240 | Pfam | Helix-loop-helix DNA-binding domain | 81 | 128 | IPR011598 | GO:0046983(InterPro) | |
Cone14ag1119 | 240 | SMART | finulus | 82 | 133 | IPR011598 | GO:0046983(InterPro) | |
Cone14ag1119 | 240 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 82 | 151 | IPR036638 | GO:0046983(InterPro) | |
Cone14ag1119 | 240 | CDD | bHLH_AtILR3_like | 81 | 156 | - | - | |
Cone14ag1119 | 240 | FunFam | Transcription factor bHLH34 | 67 | 125 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag1212 | Cone-Chr12:9455206 | Cone14ag1119 | Cone-Chr14:9321339 | 7.10E-08 | dispersed | |
Cone14ag1119 | Cone-Chr14:9321339 | Cone4ag0319 | Cone-Chr4:1448078 | 3.03E-32 | dispersed | |
Cone1ag0107 | Cone-Chr1:591227 | Cone14ag1119 | Cone-Chr14:9321339 | 1.06E-50 | wgd | |
Cone12ag1399 | Cone-Chr12:10289289 | Cone14ag1119 | Cone-Chr14:9321339 | 2.95E-73 | wgd | |
Cone14ag1119 | Cone-Chr14:9321339 | Cone15ag1137 | Cone-Chr15:9236738 | 3.34E-129 | wgd | |
Cone14ag1119 | Cone-Chr14:9321339 | Cone8ag1455 | Cone-Chr8:11228658 | 1.61E-69 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44793 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone14ag1119 | - | - | - | 0.0 |