Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1139 ATGATGCAACAGCCAAATTCCGGTGTGGTTCCAGCACAGCAGATGACGTCCGATCAGCAGTATCATCATCAGGTGCCACCGCAGCAGTGTCATCATCAGGTGCCACCGCAGCAGTGGATGATGATGCCGCCTCAGCAGCAAGCTCCTTCGCCGGTACCACCGCCAGTTGGTTGGACCCCACAGGCCGTGCCGCCTCCTATTCCAAGCCATGCTCAGCAGTACCCAGCCGCTACGAATGGTGGATCTGATGAGATCCGCTCCCTGTGGATCGGAGATTTGCAGCAGTGGATGGACGAGAGCTATCTCGTGAGCTGCTTTCCTCAAATCGGCGAGGTTGTCTCTGCAAAGGTTATTCGAAATAAGCAAACAGGAATGCCTGATGGATATGGTTTCATTGAGTTTGTTTCTCGTGCTGCTGCAGAGAGGATTTTACAAACTTATAATGGCACATTGATGCCCAACACTGAGCAAATTTTCCGACTGAATTGGGCTACTCTTGGTGCTGGTGAGAGGCGTCAGGATGATGGTCCTGACTACACTATTTTCGTGGGAGATTTGGCTGGTGATGTTACTGATTACACCCTCCAAGAGACATTTAGATCTGTATACCATTCTGTGAAAGGTGCTAAAGTTGTTACTGATAGGGCCACTGGACGTACTAAAGGTTATGGTTTTGTTAGATTTGGTGATGAAAATGAACAATTGCGGGCCCTCACTGAAATGAATGGCATGTATTGTTCCTCTCGGCCCATGCGAATCGGAGCTGCTGCTTCAAAGAAGCCTGTTGGAGTTCAACAGTATCAGAAAGCTGCCAACCAAACTTCTCCAGGAAATCAAGGGGAAAGTGATCCAGATAACACAACAATCTTTGTTGGGGGCCTAGACTCTAGTGTCTCTGATGATCATTTAAGACAAGTCTTTGGCCAGTTTGGGGAACTTGTTCATGTCAAAATACCAGCGGGCAAACGTTGTGGTTTTGTTCAGTTTTCTAATAGAAATTGTGCAGAGCAAGCATTGTTAATCTTAAATGGAACACAACTAGGAGGACAAAGTGTTCGCCTTTCATGGGGGCGCAGTCCAAACAAACAGGTTCAACCAGATCAGGCTCAATGGAATGTGGGAGGTGGGGCTGGTGGATATTATGGATATCCACAAGGTTATGACACATATGGATATGGAGCAAATCCACAAGACCCAAACATGTTCTATGGAGGTTACCCCGGCTATGGAAACTACCAGCAACCAGGAGCTTACCAACAGCCACAGCAGTGA 1272 47.8 MMQQPNSGVVPAQQMTSDQQYHHQVPPQQCHHQVPPQQWMMMPPQQQAPSPVPPPVGWTPQAVPPPIPSHAQQYPAATNGGSDEIRSLWIGDLQQWMDESYLVSCFPQIGEVVSAKVIRNKQTGMPDGYGFIEFVSRAAAERILQTYNGTLMPNTEQIFRLNWATLGAGERRQDDGPDYTIFVGDLAGDVTDYTLQETFRSVYHSVKGAKVVTDRATGRTKGYGFVRFGDENEQLRALTEMNGMYCSSRPMRIGAAASKKPVGVQQYQKAANQTSPGNQGESDPDNTTIFVGGLDSSVSDDHLRQVFGQFGELVHVKIPAGKRCGFVQFSNRNCAEQALLILNGTQLGGQSVRLSWGRSPNKQVQPDQAQWNVGGGAGGYYGYPQGYDTYGYGANPQDPNMFYGGYPGYGNYQQPGAYQQPQQ 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9445105 9450570 + Conep14aG0116300.1 Cone14ag1139 452988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1139 423 Gene3D - 178 255 IPR012677 -
Cone14ag1139 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 287 359 IPR000504 GO:0003723(InterPro)
Cone14ag1139 423 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 50 362 IPR050825 GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005829(PANTHER)
Cone14ag1139 423 MobiDBLite consensus disorder prediction 264 285 - -
Cone14ag1139 423 FunFam polyadenylate-binding protein RBP45 270 367 - -
Cone14ag1139 423 FunFam Polyadenylate-binding protein RBP45C 169 263 - -
Cone14ag1139 423 Gene3D - 262 396 IPR012677 -
Cone14ag1139 423 CDD RRM2_SECp43_like 178 257 - -
Cone14ag1139 423 Gene3D - 85 165 IPR012677 -
Cone14ag1139 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 258 IPR000504 GO:0003723(InterPro)
Cone14ag1139 423 SUPERFAMILY RNA-binding domain, RBD 85 259 IPR035979 GO:0003676(InterPro)
Cone14ag1139 423 CDD RRM1_SECp43_like 87 165 - -
Cone14ag1139 423 Pfam RNA recognition motif 181 251 IPR000504 GO:0003723(InterPro)
Cone14ag1139 423 Pfam RNA recognition motif 88 155 IPR000504 GO:0003723(InterPro)
Cone14ag1139 423 Pfam RNA recognition motif 289 352 IPR000504 GO:0003723(InterPro)
Cone14ag1139 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 166 IPR000504 GO:0003723(InterPro)
Cone14ag1139 423 SUPERFAMILY RNA-binding domain, RBD 268 389 IPR035979 GO:0003676(InterPro)
Cone14ag1139 423 MobiDBLite consensus disorder prediction 1 22 - -
Cone14ag1139 423 SMART rrm1_1 288 355 IPR000504 GO:0003723(InterPro)
Cone14ag1139 423 SMART rrm1_1 180 254 IPR000504 GO:0003723(InterPro)
Cone14ag1139 423 SMART rrm1_1 87 162 IPR000504 GO:0003723(InterPro)
Cone14ag1139 423 MobiDBLite consensus disorder prediction 265 285 - -
Cone14ag1139 423 FunFam Polyadenylate-binding protein RBP47B 85 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1139 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1139 Cone-Chr14:9445105 Cone6ag0064 Cone-Chr6:343548 9.50E-211 dispersed
Cone14ag1139 Cone-Chr14:9445105 Cone15ag1157 Cone-Chr15:9359542 1.15E-263 wgd
Cone14ag1139 Cone-Chr14:9445105 Cone6ag1084 Cone-Chr6:6571176 3.13E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002064 4 5 3 6 2 2 0 1 1 0 0 2 2 2 2 3 2 6 1 2 1 2 2 2 1 2 2 3 2 2 65