Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1140 ATGAAAAGGAAATCGAAATCAAGGAACTTTACGAAGCAAAAGAGGATCTCAGAAGGAGAAGAAATCGAACTCCTAAACGCATGGATCGAGTCTCAGAAACCAGAATCAGGCTCCAATCCAATGTCTCTCCCTCCTCTGTCAGAGAATCCACCAATCGGTCACCTCGGTTCGGGTACCTACTCGCGCTATTCCGGCTCTACCACGTTCGATCAGTTGCCTATATCGAAGAAGACCAAGGATGGATTGCGGAAATCGAAGTATATTGAAATGACTGATATTCAGAGAGCGTCTCTACCTCACGCACTTTGCGGTAGAGATGTTCTTGGCGCAGCAAAAACTGGGTCTGGAAAGACTCTGGCCTTTCTTATACCTATTTTAGAGAAGCTATATAGAGAGAGGTGGGGTCCAGAGGATGGGGTGGGGTGTATAATTCTATCTCCCACAAGGGAATTAGCAGGGCAACTGTTTGATGTATTAAAATCAGTTGGAACATTTCATAATTTTAGTGCCGGCCTCTTAATTGGTGGTCGTGAAGATGTAGACGACGAGAAGCAGCGTGTCAATGAACTAAACATTCTTGTTTGTACTCCTGGTCGTCTTCTTCAGCACATGGACGAGACTCCAAATTTTGATTGTTCTCAGCTTCAGGTTCTAGTCCTTGACGAGGCAGATCGTATTCTTGATGTTGGTTTTAAGAAGGCTTTAAATGCGATTATCTCGCAACTGCCAAAGCAAAGACAAACCTTTCTTTTCTCAGCAACTCAAACAAAGTCAGTCCAGGATCTTGCCAGACTAAGTCTGAAGGACCCTGAGTATCTAAGCGTGCACAAGGAGTCTATCACTGCCACTCCAAGTCGATTGCAGCAAACGGCTATTATTGTTCCTCTTGAACAGAAGCTGGACATGTTATGGAGTTTCATAAAATCTCATCTTAATTCGAAGATTTTAGTGTTTCTCTCAACCGGCAAACAGGTAAAGTTTGTATATGAGACTTTCAAGAAGCTCCGTCCTGGAATTCCATTGAAGTGTCTTTTTGGAAAGCAGAGCCTGGAGAGAAGATTGAGAGTATACTCTGAATGTTGTGAAGGGCGTTCTGTTCTCTTTGCCACAGATGTAGCTTCAAGAGGACTTGATTTTAAAGGCCTGGCCTTAAGCGGACATGATTCTAAGAAGGGTGTTGATTGGGTTGTACAGGTTGACTGTCCTGAAGATGTCGAGTCTTACATACACAGAGTTGGCCGCACAGCCCGTTATAAATCTGAAGGGAAGGCATTAATATTTTTTATGCCTTCTGAGATGAAAATGCTCGAAATGCTCAAGGATGCAAAAGTGCCCGTACATTTTAAGAAGGCAAACACGGAAAAGCTTGAACCCATTTCTGGAATGCTGTCGGCTTTACTGGTTCAGTATCCTGATTTTAAGCACACAGCTCTGAGAGCCTTTATCACATATGTCAAATCCATTTATATTAAGAAGAACAAGGAAATATTTGATGTGACAAAACTTCCGATAGAAGAATATTCGGCTTCACTCGGGCTGCCGATGACCCCAAAACTTCGATTTCTGAACAAGAATACTAAGGCAAAGAATTCCTCAAAGAAATCTTTCCGTGTTGAATTAGAAATTTCCGAGCCAGATGGTTTTAATATTCCAAGTGGTAATCTGGATTATGTCAACCATAAAGAAGAATTGGAGGAGGAATTACTTATACCGAAGGATGCCATAAATGGCGGCAAAAGGAAAGCTACTGAAATAGAAGATGTCATGCCTGCTGCTGCCATTACAAAGAAACAGAAGTTAAGGATCAATTTTCGTAGACCACTTGGAAGTAAAATTGTATTTGACGAGGATGAAGATGAAGATGGCGAGGCACCCTCTCTTCCTCCTCTTGCTAGGGTGGCCAACACTGATTCTGGCAACAAATCATTTCAACTTGACAAAGATGCAAGAGAAGAGTATTATAAGAAGATGTTGGAAGAGCATAAGATAGCAGACCGGGAAGCCAAACTCCTAGACCGAGAGCGATGCCGACAGATGCGTGTCAAGAAGAAGATGAAATTGAAGGGGAAGGGCAGGGAGGAAGAAGAAGAGGACGAAGAAGATGATCTTTCCGGATCAGATGAAGAAAACGGTACCCAAAACCGGCGCAATAAGAAATATAAGAAGATACAATTTGATAGTGAGAGTGAAGATGATAATGAAAAGTCTAGGAAGAAGACTGGATTTTCTGATGACTCCATTTCTGTAGCAGACCAAGAAGAGTTGGCTCTCAAGCTGTTAAATTCCATGCACTCATAG 2298 42.43 MKRKSKSRNFTKQKRISEGEEIELLNAWIESQKPESGSNPMSLPPLSENPPIGHLGSGTYSRYSGSTTFDQLPISKKTKDGLRKSKYIEMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFLIPILEKLYRERWGPEDGVGCIILSPTRELAGQLFDVLKSVGTFHNFSAGLLIGGREDVDDEKQRVNELNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKALNAIISQLPKQRQTFLFSATQTKSVQDLARLSLKDPEYLSVHKESITATPSRLQQTAIIVPLEQKLDMLWSFIKSHLNSKILVFLSTGKQVKFVYETFKKLRPGIPLKCLFGKQSLERRLRVYSECCEGRSVLFATDVASRGLDFKGLALSGHDSKKGVDWVVQVDCPEDVESYIHRVGRTARYKSEGKALIFFMPSEMKMLEMLKDAKVPVHFKKANTEKLEPISGMLSALLVQYPDFKHTALRAFITYVKSIYIKKNKEIFDVTKLPIEEYSASLGLPMTPKLRFLNKNTKAKNSSKKSFRVELEISEPDGFNIPSGNLDYVNHKEELEEELLIPKDAINGGKRKATEIEDVMPAAAITKKQKLRINFRRPLGSKIVFDEDEDEDGEAPSLPPLARVANTDSGNKSFQLDKDAREEYYKKMLEEHKIADREAKLLDRERCRQMRVKKKMKLKGKGREEEEEDEEDDLSGSDEENGTQNRRNKKYKKIQFDSESEDDNEKSRKKTGFSDDSISVADQEELALKLLNSMHS 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9450662 9455210 - Conep14aG0116400.1 Cone14ag1140 452989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1140 765 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 67 95 IPR014014 GO:0003724(InterPro)
Cone14ag1140 765 MobiDBLite consensus disorder prediction 28 57 - -
Cone14ag1140 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 435 IPR027417 -
Cone14ag1140 765 CDD DEADc_DDX10 78 276 - -
Cone14ag1140 765 SMART helicmild6 326 419 IPR001650 -
Cone14ag1140 765 Gene3D - 57 279 IPR027417 -
Cone14ag1140 765 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 273 IPR014001 -
Cone14ag1140 765 MobiDBLite consensus disorder prediction 682 750 - -
Cone14ag1140 765 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 219 227 IPR000629 -
Cone14ag1140 765 PANTHER RNA HELICASE 68 683 - GO:0005634(PANTHER)|GO:0006364(PANTHER)
Cone14ag1140 765 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 295 467 IPR001650 -
Cone14ag1140 765 Pfam Domain of unknown function (DUF4217) 471 518 IPR025313 -
Cone14ag1140 765 CDD SF2_C_DEAD 287 428 - -
Cone14ag1140 765 Pfam Helicase conserved C-terminal domain 299 418 IPR001650 -
Cone14ag1140 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 275 IPR027417 -
Cone14ag1140 765 SMART ultradead3 86 290 IPR014001 -
Cone14ag1140 765 Coils Coil 654 674 - -
Cone14ag1140 765 MobiDBLite consensus disorder prediction 615 647 - -
Cone14ag1140 765 MobiDBLite consensus disorder prediction 708 744 - -
Cone14ag1140 765 Pfam DEAD/DEAH box helicase 91 262 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cone14ag1140 765 Gene3D - 286 540 IPR027417 -
Cone14ag1140 765 SMART DUF4217_3 458 521 IPR025313 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1140 K14776 - - gmx:100792106 927.932
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1140 Cone-Chr14:9450662 Cone6ag1202 Cone-Chr6:9341121 3.86E-95 dispersed
Cone14ag1140 Cone-Chr14:9450662 Cone15ag1158 Cone-Chr15:9364071 8.41E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g503 . . . . Bpe09g00180 . . Bma13g01054 . . . . . . . . . . . . . . . . Cla10g00512 Cam10g0507 Cec10g0524 Cco10g0511 Clacu10g0528 Cmu10g1354 Cre10g0758 . . Cone14ag1140 Cone15ag1158 . Csa03g00520 . Cme06g02259 . Blo10g00825 . Bda12g00904 . . . . Sed14g0162 . . Cma04g00948 . . . . Cpe01g00859 Bhi11g00629 Tan01g1698 Cmetu12g0970 . . Mch10g1261 . . . . . . . . Lsi05g00605 . Chy06g01810 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010643 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32