Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1146 ATGCCTTCGGCTCAAGATCCGTTCTATGTCGTGAAAGAGGAAATTCAGGAATCTATTGATAAATTGTTATCAACCTTTCATCAATGGGAACGAATTCCTTATGATACTGGAGAGAGATTGCATCTCACTAAGGATCTACTTGCTAGTTGTGAGAGCATTGAGTGGCAGGTGGATGAGTTGGACAAAGCTATTGCTGTAGCAGCAAGAGATCCTGCTTGGTATGGGATTGATGAAGTCGAACTTGAAAAACGAAGGAGGTGGACAAGCACCGCTCGTACTCAGGTTGCAAATGTTAAGAAAGTGGTGGGTGCTGGTAAGGACTTGAGTGGTACTGGTACTACAAGTGCGAGTGGAATGCATAGGGAGCTAATGAGACTGCCTAACACGAATCAAGCGGACCGGTCCCACCAGTACTCAGCTGATGACAATGATGATTTCATAGCATCCGAATCAGACCAACAAATGCTTCTCATAAAACAGCAGGATGAGGAATTGGATGAGGTCAGTGCAAGCGTACAGCGAATTGGAGGTGTTGGGCTTACTATCCATGAAGAACTTCTAGCTCAGGATAGAATTATAGATGAATTAGGTATGGAGATGGAAAGTACATCAAACCGTCTCGATTTTGTTCAGAAAAAGGTGGGATTGGTAATGAAAAAGGCAGGTGCCAAGGGGCAGATAATGATGATATTGTTTTTGGTTGTTTTATTCATCATCCTATTTGTTTTGGTGTTCTTTACCTAA 744 42.74 MPSAQDPFYVVKEEIQESIDKLLSTFHQWERIPYDTGERLHLTKDLLASCESIEWQVDELDKAIAVAARDPAWYGIDEVELEKRRRWTSTARTQVANVKKVVGAGKDLSGTGTTSASGMHRELMRLPNTNQADRSHQYSADDNDDFIASESDQQMLLIKQQDEELDEVSASVQRIGGVGLTIHEELLAQDRIIDELGMEMESTSNRLDFVQKKVGLVMKKAGAKGQIMMILFLVVLFIILFVLVFFT 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9492524 9494755 - Conep14aG0117000.1 Cone14ag1146 452995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1146 247 SUPERFAMILY t-snare proteins 5 100 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cone14ag1146 247 FunFam syntaxin-61 isoform X1 158 219 - -
Cone14ag1146 247 Pfam SNARE domain 192 243 IPR000727 -
Cone14ag1146 247 CDD SNARE_Qc 158 214 - -
Cone14ag1146 247 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Cone14ag1146 247 PANTHER SYNTAXIN 12 234 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cone14ag1146 247 Gene3D - 162 226 - -
Cone14ag1146 247 FunFam Syntaxin 10 3 105 - -
Cone14ag1146 247 Pfam Syntaxin 6, N-terminal 6 99 IPR015260 GO:0016020(InterPro)|GO:0048193(InterPro)
Cone14ag1146 247 Gene3D - 2 104 - -
Cone14ag1146 247 SUPERFAMILY SNARE fusion complex 153 217 - -
Cone14ag1146 247 Coils Coil 193 213 - -
Cone14ag1146 247 SMART tSNARE_6 150 217 IPR000727 -
Cone14ag1146 247 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 155 217 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1146 Cone-Chr14:9492524 Cone17ag0875 Cone-Chr17:6933724 1.56E-07 dispersed
Cone14ag1146 Cone-Chr14:9492524 Cone15ag1164 Cone-Chr15:9426505 9.47E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1146 K08500 - vvi:100257700 363.999