Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1147 ATGGAGAAGATCATTAGCAAGACAAGACAATGGAGTTTAGTGTTTGGATCGCTTGTGTTTGTGTTGCTTTTTATGCTTTCACAGGGCAACATAAGCACATCAACGTGGGCACCAGAAGTTATGCTACGAACTCTTCCAAATCACCATCATCATCATCATTCTCATTCTCAAAATCACGTGGTGATGGACAATGGATTGATTCAAGTTACTTTGTCACATCCTGATGGTGATGTAGTAGGAATTAAATATAATAGCATCGATAATTTACTTGAGATTCACAATCCCGAAGATAATAGAGGATATTGGGATATCGTTTGGAGTAGAGACGGACAACTTGGCCCTCTTGCCAAATTATATGGAACCGAATTTAATGTCATAACGTCCAACGAAGAACAAGTAGAGCTTTCCTTTACCAAAACATGGACGGTTTCAGATGGCAATCAAACAATTCCTTTAAATGTTGATAAGAGATACATTATCCGTCGAGGTGTATCCGGATTTTACACATATTCCATATTGGAGCGTTTGGAAGGATTCCCAGCTGTTGAGATGAGTCAAATGACACTTGTTTTCAAGCTCCAAAACAATAAGTTTCACTATATGGCTGTCTCAGATAATAGACAAAGGATCATGCCAACTCCAAGAGATCGTGAGACGGGTGAACGTCTTGATTATAAAGAAGCTGTTCTTTTAACCAATCCCAGTGATGAAAGACTTAAAGGAGAGGTAGATGACAAATATCAATACACATGTGAGACTAAAGATAACAAACTTCATGGATGGATGTCTACTGATCCATCTGTTGGATTTTGGATGATCACACCTAGTGATGAGTTTCGTACTGGTGGACCGATGAAGCAAGTTCTTACCTCTCATGTGGGCCCAACAACCCTAGCTAGTTTTGCGAGCACCCATTATATTGGACCGGAATTGGCGATGAGATTTGAAGAAGGAGAATCATGGAAGAAGGTTTTTGGGCCTTTTTTCATATATCTAAATTCTGATAATTCTCATAATGAAGAAGAAGCTTTCAAAAATCTCTGGAAAGATGCTAAAAATCAGATGTCAACTGAAGTTAGTAGATGGCCGTATAACTTCCCGCAATCAAAAGACTTCCCTTCTTCTGACCAACGAGGAAGAGTTACCGGACAATTGATTGTCGATGACAACTATTTGAGCAATAGACAAATATTGGCCAATGATGCCTTCATCGGTTTGGCAAAACCCGGAGAAGTAGGATCGTGGCAAACGGATCAATGCAAGGGTTATCAATTTTGGACTCGTACTGACAAAAATGGGAATTTCTCAATAAACAATGTTCGAGAAGGAAGCTATAACTTATATGCTTGGGTCCCCGGCATTCTTGGAGATTATAAATATGAAGCCAACATTACAATTACACCCGGTAGTAAAATTGATTTGGACACTATAGTGTTTAGGCCACCGAGAATGGGTACCACACTTTGGGAAATAGGTATTCCTGATCGTACCGCTGCTGAATTCTATGTTCCGGATTCGTACCCAGAACTTCCGAATCATTTGTTCGATAATCATACCGACAAGTTCAGACAATATGGTTTATGGAAGCGCTATACAGATTTATATCCCAACAAGGATCTCGTGTATACAGTTGGTGTTGATGACTATCGTAAGGATTGGTTCTACGCTCAAGTTGCAAGGGATACTGGAAATGGATCATTTGTTGGAACTACCTGGCAGATAAACTTTCAACTTGAAAATGTTGATTATGCTGGAACTTATACACTCCAATTAGCATTAGCTTCAGCTTCCTATTCTCACTTACAGGTGAGAATTAACAATCCAAATGTTAGGAGACCACTTTTTTCGACTGGAAGAATAGGAAGGGATAATGCTATAGCAAGGCATGGAATTCATGGACGTTATTGGTATTTCAGCGTCCAAGTTTCAGGTTATCTACTTGCTCCGGGCAATAACGTAATCTATCTCACTCAACCTAAACATGATAGTCCATTTACTGGAATCATGTATGATTACATTCGTCTTGAGGCCCCATCCTTATAA 2043 39.45 MEKIISKTRQWSLVFGSLVFVLLFMLSQGNISTSTWAPEVMLRTLPNHHHHHHSHSQNHVVMDNGLIQVTLSHPDGDVVGIKYNSIDNLLEIHNPEDNRGYWDIVWSRDGQLGPLAKLYGTEFNVITSNEEQVELSFTKTWTVSDGNQTIPLNVDKRYIIRRGVSGFYTYSILERLEGFPAVEMSQMTLVFKLQNNKFHYMAVSDNRQRIMPTPRDRETGERLDYKEAVLLTNPSDERLKGEVDDKYQYTCETKDNKLHGWMSTDPSVGFWMITPSDEFRTGGPMKQVLTSHVGPTTLASFASTHYIGPELAMRFEEGESWKKVFGPFFIYLNSDNSHNEEEAFKNLWKDAKNQMSTEVSRWPYNFPQSKDFPSSDQRGRVTGQLIVDDNYLSNRQILANDAFIGLAKPGEVGSWQTDQCKGYQFWTRTDKNGNFSINNVREGSYNLYAWVPGILGDYKYEANITITPGSKIDLDTIVFRPPRMGTTLWEIGIPDRTAAEFYVPDSYPELPNHLFDNHTDKFRQYGLWKRYTDLYPNKDLVYTVGVDDYRKDWFYAQVARDTGNGSFVGTTWQINFQLENVDYAGTYTLQLALASASYSHLQVRINNPNVRRPLFSTGRIGRDNAIARHGIHGRYWYFSVQVSGYLLAPGNNVIYLTQPKHDSPFTGIMYDYIRLEAPSL 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9495685 9499164 - Conep14aG0117100.1 Cone14ag1147 452996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1147 680 SUPERFAMILY Galactose mutarotase-like 54 339 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cone14ag1147 680 Pfam Polysaccharide lyase family 4, domain II 401 473 IPR029413 -
Cone14ag1147 680 CDD RGL4_C 489 676 - -
Cone14ag1147 680 Pfam Polysaccharide lyase family 4, domain III 487 675 IPR029411 -
Cone14ag1147 680 Gene3D - 374 476 - -
Cone14ag1147 680 Gene3D - 484 676 - -
Cone14ag1147 680 CDD RGL4_N 58 337 - -
Cone14ag1147 680 Gene3D - 51 345 IPR014718 GO:0030246(InterPro)
Cone14ag1147 680 SUPERFAMILY Starch-binding domain-like 376 478 IPR013784 GO:0030246(InterPro)
Cone14ag1147 680 SUPERFAMILY Galactose-binding domain-like 485 676 IPR008979 -
Cone14ag1147 680 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 51 679 IPR051850 -
Cone14ag1147 680 FunFam Rhamnogalacturonate lyase B 374 474 - -
Cone14ag1147 680 Pfam Rhamnogalacturonate lyase family 52 243 IPR010325 -
Cone14ag1147 680 CDD RGL4_M 377 477 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1147 Cone-Chr14:9495685 Cone4ag1283 Cone-Chr4:10549015 2.35E-277 dispersed
Cone14ag1147 Cone-Chr14:9495685 Cone6ag1513 Cone-Chr6:11957773 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1147 K18195 - csv:101215252 836.254