Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1148 ATGTATATAACTGCTTTCTGTTGTTCATCATCTTCAGCATCAGCTTCGTCTTTGCTCTGCAGAGCTAGTAGCGTCCGCTTTTCTTCTTCTTCTACTCTCTCGAGAGTTTTCTCGCTTTCACCGTCGTTTTCTCAATCTTCCATCTCGTTCTTCAATCGGAACCATCATCGATATTTGAGCTTCTCGTCGGATCTCAGGAGATTCACTTCTTCTGTGCCTAGGTGGAGCAGCCGCGTAGATTGGCGCTCTACCGTTGGTCTCCGAGCTCAGGCTAGAATAACCGGTCCGGTGATAGAACAGTTCAAGAGGAAGATCTCCACCATGCCTTCAGAGCATGCTTTTAAGGGACTATTGACCAGTCTTCCAAAGCCTGGAGGCGGTGAATTTGGAAAATTCTACAGCTTGCCTGCTCTTAATGATCCGAGAATTGATAGGCTGCCATTCTCTATCAAGATACTATTGGAATCTGCCATACGCAATTGTGATGACTTTCAAGTTACCAAAGACAATGTTGAGAAGATAATCGATTGGGAGAACACATCTCCAAAGCAAGTTGAAGTTCCCTTTAAGCCTGCCCGTGTTCTTCTTCAGGATTTTACTGGAGTACCTGCTGTGGTCGACCTTGCTTGCATGCGAGATGCAATGAAGAATCTCGGCAGTGATCCTAACAAGATCAATCCATTGGTTCCGGTGGACCTAGTAATTGATCATTCAGTACAGGTTGATGTGGCAAGATCCGAAAATGCAGTGCACGAAAATATGGAACATGAGTTTCGTAGGAATAGAGAGAGATTTGCTTTCCTCAAATGGGGATCTTCTGCTTTCCATAACATGCTTGTTGTTCCCCCTGGCTCTGGGATAGTCCACCAGGTTAATCTGGAATACCTTGGAAGGGTTGTATTTAATACTGATGGGATTCTCTACCCTGATAGTTTGGTTGGTACTGACTCCCACACAACCATGATTGATGGGTTGGGAGTTGCTGGCTGGGGAGTTGGAGGAATTGAAGCAGAGGCAACAATGCTTGGCCAACCCTTGAGCATGGTATTGCCTGGTGTTGTTGGATTCAAACTGTCTGGAAATCTACGTAATGGTGTTACAGCTACTGACTTGGTTTTAACGGTGACCCAAATGTTGAGAAAACATGGCGTTGTTGGGAAGTTCGTAGAGTTTTATGGTGAGGGTATGAGGGAACTATCAGTGTCCGATAGAGCCACAATTGCAAACATGTCTCCTGAATATGGAGCAACAATGGGTTTTTTCCCTGTAGATCACATGACATTGCAGTACCTTAAACTAACTGGAAGAAGTGATGAAACAGTGGCAATGATTGAAGCCTATTTGCGTGCAAACAAAATGTTTGTCGACTATAATGAGCCACACCTAGAAAGAGTCTACACGTCCTATCTGCAGTTGGACCTAGCAGAAGTTGAACCCAGTGTTTCTGGACCAAAACGTCCTCACGATCGAGTTCCTTTGAAGGACATGAAGGCTGATTGGCATGCTTGTCTTGATAACAAAGTTGGGTTTAAAGGATTTGCAGTTCCAAAGGAAGAACAGGGTAAAGTGGTGAAATTCTCCTACCACGGACAACCTGCCGAACTTAGGCATGGAAGTGTTGTTATTGCAGCAATCACAAGCTGTACAAACACATCAAATCCTAGCGTCATGCTGGGGGCAGGCCTTGTGGCAAAGAAAGCCTGTGAACTAGGTTTGGAGGTTACGCCCTGGATTAAGACAAGTCTTGCTCCTGGATCTGGAGTTGTTACAAAGTATCTGTTACAAAGTGGCCTGCAAAAGTATCTGAACCAGCAGGGCTTTAATATTGTGGGCTATGGTTGCACAACGTGTATTGGCAATTCTGGAGACCTTGATGAATCAGTCGCCTCTGCCATTGCTGATAATGACATCATTGCAGCAGCTGTCCTTTCTGGAAACCGAAATTTTGAGGGCCGTGTTCATCCTCTAACTAGAGCCAACTACCTCGCCTCTCCCCCATTGGTTGTTGCTTATGCACTGGCTGGCACAGTTGACATTGACTTTGAAAAAGAGCCCATTGGAACAGGGAACGATGGGAAGAGTATCTACTTCCAAGATATCTGGCCTAGTAACGAGGAGATTGCACAAGTTGTTCAATCCAGTGTTTTGCCCGATATGTACAAGACCACTTACGAGGCAATCACAAAGGGCAATCCAATGTGGAACCAGCTCTCTGTCTGGGGCTCAACTCTCTACTCGTGGGACCCAAACTCGACTTACATCCATGAACCCCCGTATTTCAAGAACATGACCCTGGACCCACCTGGCCCACACAGAGTAAAAGATGCATATTGCTTGCTCAACTTTGGGGACAGTGTAACGACCGATCACATATCCCCGGCCGGAAGTATCCACAAAGACAGTCCGGCTGCAAAATATCTCCTTGAACGTGGGGTCGACCCTAAGGACTTCAATTCTTATGGAAGCCGTCGAGGAAATGATGAAGTGATGACCAGGGGCACGTTTGCTAATATCCGGCTCCTGAATAAGCTTTTAAATGGCGAAATTGGCCCGAAAACTATTCACATTCCTACCGGAGAGAAGCTTCATGTTTTTGATGCAGCCATGAGATACAAGGCTGCTGGTCAAGACACCATAATCTTAGCCGGAGCAGAATATGGAAGTGGTAGCTCTCGAGATTGGGCTGCTAAGGGCCCAATGCTACAGGGAGTGAAAGCAGTGATTGCTAAAAGTTTCGAGCGAATCCATCGGAGTAATCTAGTTGGAATGGGGATCATCCCTCTTTGTTTCAAGCATGGTGAAGATGCAGACACACTAGGGTTGACCGGTCATGAACGCTACACAATAGATCTTCCCCGAAAAATCAACCAAATCCGGCCAGGACAAGACATTGAAGTCAAAACCAACTCTGGAAAATCTTTCACATGTGTAGTTCGTTTCGACACCGAGGTGGAGTTGGCTTATTTTGACCATGGAGGCATTCTTCCTTTGGTTATCCGAAACTTGACTAAAGAGTAG 3018 45.83 MYITAFCCSSSSASASSLLCRASSVRFSSSSTLSRVFSLSPSFSQSSISFFNRNHHRYLSFSSDLRRFTSSVPRWSSRVDWRSTVGLRAQARITGPVIEQFKRKISTMPSEHAFKGLLTSLPKPGGGEFGKFYSLPALNDPRIDRLPFSIKILLESAIRNCDDFQVTKDNVEKIIDWENTSPKQVEVPFKPARVLLQDFTGVPAVVDLACMRDAMKNLGSDPNKINPLVPVDLVIDHSVQVDVARSENAVHENMEHEFRRNRERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSLVGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQPLSMVLPGVVGFKLSGNLRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMRELSVSDRATIANMSPEYGATMGFFPVDHMTLQYLKLTGRSDETVAMIEAYLRANKMFVDYNEPHLERVYTSYLQLDLAEVEPSVSGPKRPHDRVPLKDMKADWHACLDNKVGFKGFAVPKEEQGKVVKFSYHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVTPWIKTSLAPGSGVVTKYLLQSGLQKYLNQQGFNIVGYGCTTCIGNSGDLDESVASAIADNDIIAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGNDGKSIYFQDIWPSNEEIAQVVQSSVLPDMYKTTYEAITKGNPMWNQLSVWGSTLYSWDPNSTYIHEPPYFKNMTLDPPGPHRVKDAYCLLNFGDSVTTDHISPAGSIHKDSPAAKYLLERGVDPKDFNSYGSRRGNDEVMTRGTFANIRLLNKLLNGEIGPKTIHIPTGEKLHVFDAAMRYKAAGQDTIILAGAEYGSGSSRDWAAKGPMLQGVKAVIAKSFERIHRSNLVGMGIIPLCFKHGEDADTLGLTGHERYTIDLPRKINQIRPGQDIEVKTNSGKSFTCVVRFDTEVELAYFDHGGILPLVIRNLTKE 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9501544 9507493 - Conep14aG0117200.1 Cone14ag1148 452997

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1148 1005 SUPERFAMILY LeuD/IlvD-like 744 1002 - -
Cone14ag1148 1005 FunFam Aconitate hydratase 768 1004 - -
Cone14ag1148 1005 ProSitePatterns Aconitase family signature 2. 606 619 IPR018136 -
Cone14ag1148 1005 CDD AcnA_IRP 193 677 - -
Cone14ag1148 1005 Gene3D - 704 765 - -
Cone14ag1148 1005 SUPERFAMILY Aconitase iron-sulfur domain 126 739 IPR036008 -
Cone14ag1148 1005 Gene3D Aconitase, domain 4 768 1004 IPR015928 -
Cone14ag1148 1005 PRINTS Aconitase family signature 479 493 IPR001030 -
Cone14ag1148 1005 PRINTS Aconitase family signature 397 410 IPR001030 -
Cone14ag1148 1005 PRINTS Aconitase family signature 544 555 IPR001030 -
Cone14ag1148 1005 PRINTS Aconitase family signature 278 286 IPR001030 -
Cone14ag1148 1005 PRINTS Aconitase family signature 307 320 IPR001030 -
Cone14ag1148 1005 PRINTS Aconitase family signature 606 619 IPR001030 -
Cone14ag1148 1005 PRINTS Aconitase family signature 383 396 IPR001030 -
Cone14ag1148 1005 PRINTS Aconitase family signature 254 267 IPR001030 -
Cone14ag1148 1005 PRINTS Aconitase family signature 321 336 IPR001030 -
Cone14ag1148 1005 Pfam Aconitase family (aconitate hydratase) 172 675 IPR001030 -
Cone14ag1148 1005 ProSitePatterns Aconitase family signature 1. 540 556 IPR018136 -
Cone14ag1148 1005 Gene3D Aconitase, domain 3 112 479 IPR015931 -
Cone14ag1148 1005 Pfam Aconitase C-terminal domain 804 932 IPR000573 -
Cone14ag1148 1005 NCBIfam aconitate hydratase AcnA 130 1002 IPR006249 -
Cone14ag1148 1005 FunFam cytoplasmic aconitate hydratase 480 703 - -
Cone14ag1148 1005 Gene3D Aconitase, domain 3 480 703 IPR015931 -
Cone14ag1148 1005 FunFam Aconitate hydratase 112 479 - -
Cone14ag1148 1005 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 111 1003 IPR006249 GO:0003994(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006099(PANTHER)|GO:0006101(PANTHER)|GO:0030350(PANTHER)|GO:0051539(PANTHER)
Cone14ag1148 1005 CDD AcnA_IRP_Swivel 781 951 IPR044137 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1148 K01681 - - cit:102628904 1716.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1148 Cone-Chr14:9501544 Cone9ag0087 Cone-Chr9:377151 3.97E-31 dispersed
Cone9ag0088 Cone-Chr9:379119 Cone14ag1148 Cone-Chr14:9501544 1.34E-124 transposed
Cone12ag1380 Cone-Chr12:10207217 Cone14ag1148 Cone-Chr14:9501544 0 wgd
Cone14ag1148 Cone-Chr14:9501544 Cone8ag1438 Cone-Chr8:11163424 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g518 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000865 4 2 3 3 3 3 4 3 3 2 3 3 4 2 3 2 3 4 4 3 2 2 2 3 3 3 3 4 3 2 88