Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1154 ATGGAGGAAATGGACGAAACCGAAGCCGTACCTCAGGTTTATATGGCTTGTATTCTACACGGTCAACGTGTGGGAGTTTCATATTATGATTCCAGTATTCGCCAACTTTACGTGCTAGAAGTTTGGGAAGATGGAAGCATGGATTTTCCACTGATTGATTTAGTGAAATATCAAGCCAAGCCCCTGGTCATTTATACAAGCACTAAAAGTGAGGAGTCTCTCTTGTCTGCTTTACAGCGGAGTGATGGCACGACTGAGGCTTCTCCAGTGAAGCTTGTGAAAAGTTCAATATTCAGCTATGAGCAAGCCTGGCACAGATTGATATATCTTAGAGTAACAGGAATGGACGATGGGTTAGACATCAAGGAGAGAATATCTTATCTGAGTTCTATGATAGACATGAGAAGCGATGTTCAAGTTCGAGCCAGCGGTGGTCTTCTTGCCATATTGGAGAGTGAAAGGATCGTAGATACTCTAGATCAAAAGGAACATGGGACTGCGTCAATAACTATTGATTCTGTATCTGAGATTTCATTAAACAATTTTCTTAAACTTGACGCAGCAGCGCTTGAAGCATTGCAGATATTCCAAACAGACAAGCATCCAAGCTATATGGGAATTGGTAGATCAAAAGAAGGGTTCTCTGTATTTGGCATGATGAATAAGTGTGTAACACCAATGGGCAGACGCCTCTTGAGAAACTGGTTCCTGAGGCCAATACTAGACCTTGAAAATCTGAACAAACGCCTCGATGCTATATCATTCTTTCTTTACTCCGAAGAAATGATGGTCTCATTACATGAGACTTTGAAGACTGTAAAGGACATTCCGCATCTACTCAAGAAATTCAATTCCCCAAGCTCGACAAGTACTGCTGGAGACTGGGCAGCTTTTTTAAAGAGTATCTGCTCACTCTTGCATGTGAACAAGATATTTGAAGTGGGAATTTCAGAAGATCTCAGAGAGCATGTGAAAAACTCGAATCTGGATGTAATTGAGAAGGGTAATTCATGCATTACATCGGAGCTGGCTTATGTGTACGAATTGGTAATTGGAGTTCTTGATGTTTGTAGAAGCAAAGAGAAGGGATATGCAACGATTGTGAAAGATGGTTTTTGTGATGAGTTGGATGAGCTGAGGCAAATTTATGAGGAATTGCCTGAATTTTTGGAGGAGGTGTCATCAATGGAAGTTGCACAACTTCCTCAGCTGCGCAAAGGCAAGCTTGTTCCATGTATTGTCTATATACATCAAATAGGTTACCTGATGTGCATTTTTGAAGAAAAATTTTATGAAACCACCATGGAGACAATTCATGGTTTTCAATTTGCATTTTCTGACATGGATGGAGAGATGAGAAGATTTTTTTATCATACGCCAAAGACACGGGAATTGGATCATCTACTTGGGGATATTTATCACAAAATTCTAGATATGGAGCGGGCAATTATTAGAGACTTGGTGTCGCACATCCTTTTATTCTCAGTCCATCTGCTAAAGGCTGTCAATTTTGCTGCCGAACTTGATTGCTTTTTATCATTAGCACTGGTGGCTCGTCAGAACAACTATGTAAGACCTGTTTTGACTGAAGATAGCTTGCTCGACATAAAAAATGGAAGGCATGTTTTGCAGGAAATGGCAGTAGACACATTCGTTCCCAATGATACAAAGATATTTCACGAGGGAAGGGTTCAAATCATCACTGGTCCAAATTATTCAGGGAAAAGTATCTACATAAAGCAGGTTGCTTTGATTGTTTTCTTGTCCCATATTGGAAGTTTTGTACCGGCAGATGCTGCAACTGTGGGTTTGACTGATCGAATATTTTGCGCAATGGGAAGCAAGTTCATGACTGCAGAACAGTCAACGTTTATGATTGATCTACACCAAGTAGGCTTGATGCTAAGGCAGGCGACATCTCAATCTTTATGTCTGTTAGATGAATTTGGTAAAGGTACTCTTACAGAAGATGGCATCGGTTTGTTAGGTGGGACCATCAATCACTTTGCTACTTGTAATGATTCCCCAAAGGTGTTGATATGCACTCATTTGACTGAGTTGCTTAATGATACCTACTTACCAAGGTCTGAGAAGATAAACTTTTACACCATGAGTGTGATAAGGCCTGACAGTAACTCTACAGAAACTGACGACATTGTATTCCTGTATCGACTGGTACCAGGACAGACACTTCTTAGCTATGGATTGCATTGCGCGCTTCTTGCTGGTGTCCCCAAGGAGGTTATTACCCGAGCAGCATTTGTCTTGGATGCTATCGGACACAATAAGCATGTTGCGCGACTGCGGAATGAGAGTATATTAGCTCAGGATGAGCTCTATAAGAATGCAGTGGACAAGATGTTGGCATTGGATATCAATAACTGTGATCTAAGCCTTTTCTTTCAAGATATATTTCCTTAG 2421 40.85 MEEMDETEAVPQVYMACILHGQRVGVSYYDSSIRQLYVLEVWEDGSMDFPLIDLVKYQAKPLVIYTSTKSEESLLSALQRSDGTTEASPVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLDIKERISYLSSMIDMRSDVQVRASGGLLAILESERIVDTLDQKEHGTASITIDSVSEISLNNFLKLDAAALEALQIFQTDKHPSYMGIGRSKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLENLNKRLDAISFFLYSEEMMVSLHETLKTVKDIPHLLKKFNSPSSTSTAGDWAAFLKSICSLLHVNKIFEVGISEDLREHVKNSNLDVIEKGNSCITSELAYVYELVIGVLDVCRSKEKGYATIVKDGFCDELDELRQIYEELPEFLEEVSSMEVAQLPQLRKGKLVPCIVYIHQIGYLMCIFEEKFYETTMETIHGFQFAFSDMDGEMRRFFYHTPKTRELDHLLGDIYHKILDMERAIIRDLVSHILLFSVHLLKAVNFAAELDCFLSLALVARQNNYVRPVLTEDSLLDIKNGRHVLQEMAVDTFVPNDTKIFHEGRVQIITGPNYSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDRIFCAMGSKFMTAEQSTFMIDLHQVGLMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINHFATCNDSPKVLICTHLTELLNDTYLPRSEKINFYTMSVIRPDSNSTETDDIVFLYRLVPGQTLLSYGLHCALLAGVPKEVITRAAFVLDAIGHNKHVARLRNESILAQDELYKNAVDKMLALDINNCDLSLFFQDIFP 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9541856 9550143 - Conep14aG0117800.1 Cone14ag1154 453003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1154 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 758 IPR027417 -
Cone14ag1154 806 PIRSF Msh6 1 798 IPR017261 GO:0006298(InterPro)|GO:0030983(InterPro)
Cone14ag1154 806 Pfam MutS domain III 188 515 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone14ag1154 806 Gene3D - 523 793 IPR027417 -
Cone14ag1154 806 FunFam DNA mismatch repair protein MSH5 524 790 - -
Cone14ag1154 806 ProSitePatterns DNA mismatch repair proteins mutS family signature. 642 658 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone14ag1154 806 Gene3D - 183 408 - -
Cone14ag1154 806 SUPERFAMILY DNA repair protein MutS, domain III 186 522 IPR036187 -
Cone14ag1154 806 SMART DNAend 211 547 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone14ag1154 806 SMART mutATP5 562 757 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone14ag1154 806 Pfam MutS domain V 565 757 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cone14ag1154 806 CDD ABC_MSH5_euk 535 744 - -
Cone14ag1154 806 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 10 772 IPR045076 GO:0003690(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006298(InterPro)|GO:0030983(InterPro)|GO:0051026(PANTHER)|GO:0140664(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1154 K08741 - - csv:101222668 1335.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1154 Cone-Chr14:9541856 Cone19ag0263 Cone-Chr19:1774553 4.39E-48 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g533 . . . . . . Bma10g00555 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1154 . . . . . Blo07g00899 . Bda05g00714 . . Bpe03g00787 . . . . . . . . . Cpe14g00746 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004808 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 4 1 1 1 1 1 40