Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1160 ATGGGTAGCAGAGTCAAGCTTTCTCTTGCCATTCTCTTCCTCTGCTTCCTTTTGTTTCCTCTGGTATTTTCTGCTTCTAATGATGGGTTGGTGAGAATTGGACTCAAAAAGAAGAAGTTTGATCAGAACGACCGGCTTGCTAGTCAGCTTGAGTCTAAGGCAGGGAAGCCATTGAGGGGTCCTACTAGGAAATATCATCTTTCTGGTAACTCAGCAAACCTGGAGGACACTGATATTGTGGAGCTCAAGAATTACATGGATGCTCAATATTTTGGTGAGATTGGTGTTGGTACTCCCCCTCAGAAGTTTACAGTTATATTCGACACTGGTAGTTCTAATTTGTGGGTTCCCTCTTCCAGGTGTTATTTCTCATTCCAGGTAGCTTGCTTTTTCCACTCTAAGTACAAGAGCAGCAGTTCAAGCACCTACAAGAAGAATGGTAAACCTGCTGCTATCCATTATGGGACAGGGGCTATTTCTGGGTACTTTAGCCAAGACCATGTCACAGTTGGAGATCTAGTTGTCAAGGATCAGGAATTGATCGAGGCAACCAGAGAGCCCAGCCTTACATTCTTAATGGCGAAGTTTGATGGTATACTTGGACTTGGTTTTCAAGAAATTTCAGTCGGAAATTCAGTGCCAGTATGGTACAACATGGTTGACCAAGGCCTTGTAAAAGAACCTATTTTCTCCTTTTGGTTTAATCGAAATGCTGACGAGGAAGAAGGCGGTGAAATTGTTTTTGGTGGTGTGGATCCTAATCACTATAAGGGTGAGCATACCTATGTTCCAGTATCAAAGAAAGGCTACTGGCAGTTTGATATGGGTGAGGTTTTGGTTGATGGTAAAACAACCGGCTTTTGTGCAAGGGGATGCTCTGCCATTGCTGATTCAGGAACGTCTTTGTTAGCTGGCCCAACGGCTATTATAACTGAAGTGAACCATGCCATTGGAGCCACCGGAGTTGTAAGTCAGGAATGCAAGTCTGTTGTTGCACAATATGGTGAAACCATCATCAAAATGCTTTTGGCTAAGGACGAACCCCAAAAAATCTGCTCACAGATTGGTCTCTGCACCTTTGATGGTAGTCGAAGTGTAAGCATGGGCATCGAGAGTGTTGTGGATGAAAAGGCTCATAAAAACTCTGGTGGATTCCATGATGCCATGTGCTCGACTTGTGAGATGACTGTCGTGTGGATGCAAAACCAGCTCAAGCAAAACCAGACTCTGGATTCCATTCTCAACTATGTAAATCAGCTCTGTGATCGGATTCCAAGCCCAATGGGAGAATCCGCAGTTGATTGTGCCAGCTTGTCTTCCATGCCTGATGTTTCCTTCACAATTGGCGGCACCGTCTTTGACCTCACCCCTGATCAGTATATTCTCAAAGTTGGCGAGGGAGATGCTGCTCAATGTATTAGCGGTTTCACCGCTCTCGATGTCCCACCACCTAGAGGACCTCTCTGGATTTTGGGAGATGTATTCATGGGTCGTTACCATACAGTATTCGACTACGGAAACCAGAGAGTCGGATTTGCAGAAGCTGCCTAA 1551 45.0 MGSRVKLSLAILFLCFLLFPLVFSASNDGLVRIGLKKKKFDQNDRLASQLESKAGKPLRGPTRKYHLSGNSANLEDTDIVELKNYMDAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSSRCYFSFQVACFFHSKYKSSSSSTYKKNGKPAAIHYGTGAISGYFSQDHVTVGDLVVKDQELIEATREPSLTFLMAKFDGILGLGFQEISVGNSVPVWYNMVDQGLVKEPIFSFWFNRNADEEEGGEIVFGGVDPNHYKGEHTYVPVSKKGYWQFDMGEVLVDGKTTGFCARGCSAIADSGTSLLAGPTAIITEVNHAIGATGVVSQECKSVVAQYGETIIKMLLAKDEPQKICSQIGLCTFDGSRSVSMGIESVVDEKAHKNSGGFHDAMCSTCEMTVVWMQNQLKQNQTLDSILNYVNQLCDRIPSPMGESAVDCASLSSMPDVSFTIGGTVFDLTPDQYILKVGEGDAAQCISGFTALDVPPPRGPLWILGDVFMGRYHTVFDYGNQRVGFAEAA 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9569555 9573194 - Conep14aG0118400.1 Cone14ag1160 453009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1160 516 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 105 116 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone14ag1160 516 Gene3D Acid Proteases 31 250 IPR021109 -
Cone14ag1160 516 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 294 305 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone14ag1160 516 Pfam Eukaryotic aspartyl protease 89 515 IPR033121 -
Cone14ag1160 516 FunFam Aspartic proteinase A1 322 425 - -
Cone14ag1160 516 Pfam Saposin-like type B, region 2 325 358 IPR008138 -
Cone14ag1160 516 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 11 515 IPR001461 GO:0004190(PANTHER)|GO:0004190(InterPro)|GO:0006508(PANTHER)|GO:0006508(InterPro)
Cone14ag1160 516 FunFam Vacuolar aspartic proteinase 404 515 - -
Cone14ag1160 516 Pfam Saposin-like type B, region 1 389 425 IPR007856 GO:0006629(InterPro)
Cone14ag1160 516 Gene3D - 322 425 - -
Cone14ag1160 516 Gene3D Acid Proteases 251 516 IPR021109 -
Cone14ag1160 516 ProSiteProfiles Saposin B type domain profile. 322 362 IPR008139 -
Cone14ag1160 516 ProSiteProfiles Peptidase family A1 domain profile. 90 513 IPR033121 -
Cone14ag1160 516 FunFam Lysosomal aspartic protease 76 320 - -
Cone14ag1160 516 SUPERFAMILY Acid proteases 14 515 IPR021109 -
Cone14ag1160 516 SUPERFAMILY Saposin 323 425 IPR011001 -
Cone14ag1160 516 ProSiteProfiles Saposin B type domain profile. 386 427 IPR008139 -
Cone14ag1160 516 PRINTS Pepsin (A1) aspartic protease family signature 244 257 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone14ag1160 516 PRINTS Pepsin (A1) aspartic protease family signature 96 116 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone14ag1160 516 PRINTS Pepsin (A1) aspartic protease family signature 294 305 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone14ag1160 516 PRINTS Pepsin (A1) aspartic protease family signature 489 504 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone14ag1160 516 CDD phytepsin 80 514 IPR033869 GO:0004190(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1160 K08245 - - mdm:103430083 853.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1160 Cone-Chr14:9569555 Cone17ag0871 Cone-Chr17:6906433 5.53E-10 dispersed
Cone3ag0871 Cone-Chr3:4445380 Cone14ag1160 Cone-Chr14:9569555 4.32E-229 transposed
Cone12ag1368 Cone-Chr12:10162460 Cone14ag1160 Cone-Chr14:9569555 1.85E-280 wgd
Cone14ag1160 Cone-Chr14:9569555 Cone15ag1176 Cone-Chr15:9481928 0 wgd
Cone14ag1160 Cone-Chr14:9569555 Cone6ag1103 Cone-Chr6:6845577 8.05E-266 wgd
Cone14ag1160 Cone-Chr14:9569555 Cone8ag1425 Cone-Chr8:11105792 1.06E-271 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g539 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1160 Cone15ag1176 . . . . . . . . . . . . . . . . . . . Cpe14g00744 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000456 7 5 6 5 6 2 4 2 4 3 2 4 3 3 3 4 4 6 3 4 3 3 3 3 3 3 3 5 5 5 116