Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1170 ATGAAGAGAGGAAGAGGAGCCACTGGTTCCAGGCCGGCGGCGGAGTTGACATCCGCCGGTGCAGTGCCAGGGCAGGTAACCGAACCTATAATCGGATCGGGATCGAGAAATGTTTTAGCGAAAGATCCTAAATACCGAGGGGTTCGTAAAAGACCTTGGGGCAGATTCGCCGCCGAGATCAGAGACCCGTGGAAGAAAACTAGGGTTTGGCTCGGTACCTTTGATTCCGCGGAGGAGGCGGCGCGTGCGTACGATGCTGCAGCTCGATCTCTCCGTGGTCCGAAGGCGAAGACCAATTTTCCGATCTCTAACCCTATGTTTTTCAATCTTCCTCATCATCAGCATCAACATCATTATCATCACCACAATAGGAACGCGATCAACGGTCAAGATCCGTTTATGGATCACAGGTTCTACGGTGCAGATGGATTCGAGGAGCAGCAGATAATAATACCTCAAAGATCTACTTCAAGCAGCTTGAGCTCAACAGTTGAGTCATTCAGCGGTCCGAGACCGGCGTCGGTGACTCTACCACCTCCGTCGTCGACTCAACGACGGTTTCCACGAACTCCGCCGGTGGTGCCGGAGGATTGCCACAGCGACTGTGACTCTTCATCCTCCGTAATCGACGATGATGGTGATATAACTTCCTCCTCAATGAGCCGGAAGCAACCTCTGCCTTTCGATCTTAACTTCCCGCCGTTGGATGTGGTTCTCGAATACACCGGCGTTGATGAGCTCCGATGTACCGCTTTGCGCCTCTGA 765 52.94 MKRGRGATGSRPAAELTSAGAVPGQVTEPIIGSGSRNVLAKDPKYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEEAARAYDAAARSLRGPKAKTNFPISNPMFFNLPHHQHQHHYHHHNRNAINGQDPFMDHRFYGADGFEEQQIIIPQRSTSSSLSSTVESFSGPRPASVTLPPPSSTQRRFPRTPPVVPEDCHSDCDSSSSVIDDDGDITSSSMSRKQPLPFDLNFPPLDVVLEYTGVDELRCTALRL 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9624721 9626434 + Conep14aG0119400.1 Cone14ag1170 453019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1170 254 SUPERFAMILY DNA-binding domain 44 103 IPR016177 GO:0003677(InterPro)
Cone14ag1170 254 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag1170 254 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag1170 254 FunFam Ethylene-responsive transcription factor 2 44 102 - -
Cone14ag1170 254 MobiDBLite consensus disorder prediction 154 170 - -
Cone14ag1170 254 Pfam AP2 domain 43 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag1170 254 CDD AP2 43 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag1170 254 MobiDBLite consensus disorder prediction 209 224 - -
Cone14ag1170 254 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag1170 254 SMART rav1_2 44 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag1170 254 MobiDBLite consensus disorder prediction 154 224 - -
Cone14ag1170 254 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone14ag1170 254 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 217 - -
Cone14ag1170 254 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1399 Cone-Chr10:10886244 Cone14ag1170 Cone-Chr14:9624721 1.67E-59 dispersed
Cone12ag1508 Cone-Chr12:10715136 Cone14ag1170 Cone-Chr14:9624721 2.64E-65 dispersed
Cone14ag1170 Cone-Chr14:9624721 Cone8ag1554 Cone-Chr8:11648898 8.38E-63 dispersed
Cone14ag1170 Cone-Chr14:9624721 Cone15ag1186 Cone-Chr15:9539276 1.18E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44797 PF01920 Prefoldin_2 5.30E-26 CL0200 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1170 K09286 - cit:102613950 241.506