Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1182 ATGAGCGAGTCGGTGATGGAGCCAGTGGCGAACCTTGCAGCTACGGAGCCGGGCGAGCCTCAATTAGGCGAGAAGAGGTCTGCTGAGAATGGAGGAGCGAATGGTGAATTTATTGAGCAAGCGTCGAGCAAGAAGTCTAGGCTTGGCATTGGAGCCGTTTGTGATCTGAAGAGAGTTGCGGAGATCGTGTTGGTGTTGTCGACGATGGCTACTATGCGCGGAGGGAAGAAGCCGAGCGATGTTGAGGTTGAATTGATGGCGGAGGCGAGGGATAAGCTGGTGGAGATGTGTGAAGGCTTAGCTCCGAAGGAGATTGTGGAAAGAGATGGGATTGGAGCTGTGATTGAGGAGTTGGGGCTTAATGGTAAGGTTAAGGATCAGAGGTTAGGGTTTCGAGGTCCCAGATTGACTATAACGGAGAAGATGTCTCTTTCAAAGAGGAAGATGGAAGAATCCAAGAAGTTTGTTGCACCACCTCCAGCAGCTTACAATCCCCATCCATTGCACCCAAACCCAAGTGCTGTATCTGAAAACCGTAGTCCAGCATCACCTTTGGCTTGTATGTTTACGTCATCAGAAAAACCAGGTCATTTACAGGGTACCACTGGGGGGGTCCCGGTATCTTTGCCTCAAGATCCTATTTCTGCCACTACAACTTCTACCTCTTTACAGCTTCGTCTTCCAGCCAGTGAAGTAAGGGCACCACATGTACCCTCTGGTGGGTTTACTGTTAATCATTATGGAAGGGAGTCTACCTCTGCGTTTCCGAAAGCTGAAAGAGCTCCCAATGGGATTTATCCACCTCAAATACAAGGAAATTCTTCCGCAAATCACCCACTGGTCAATGCTCCTGCTTGGTCCATACAAAATCAATCTGCTTCATTGGGTAAGACTGGACCAGATCATAAGTTCCCCAATCAAACCTCTGTCAATGCTCAAGGAACAATTGATACGAGCATATCAAGAGTGACTCCTCAAACAGCAACTGGAATTATACCTGGTTCGCATCAGCCTTTGCAGAACATGAGTTTTGCTCATGCTCCTTCACTTCCTCCAAATAACCATGGTGAAATTGCAAGAATTGTTCAAAAATTGCTTCAGCCACAGCTTCCTGATCATCCAACCTGGACTCCTCCATCAAGGGATTACATGAATAAGGCAGTGACTTGCCAAGGTTGTCAGTTAACCATTAATGAGGTTGATACTGTACTTATTTGTGATGCTTGTGAGAAGGGATTTCACTTGAAATGTGTTCAGTCACCTAACCAGAGAGCAATCCCTAGAGGTGAGTGGCACTGCTCAAGGTGTTTGGCTATAAGCAATGGGAAGCCTTTGCCCCCTAAATATGGCCGTGTCATGAGGAGTAATCCACCATTGAAAGTACCTTCTAACCCTACTGGAGTTCAACTATCATCCGAGAAGAAAGGTGAAACAATGGAGTCAAAGGCCAGTCAACAGCGAACAACACTTAATGCCGGCTCTGGTTTGCAAACTCCTGCTGAGACTGGAAGTTTTGGAAGCAATTATGCTGCGTCAGTGTCAGATTCTAAGACTTCAAATGTAAAAGAAATGCATCTAAATCCATCACCAGCTTTTGGTTTTACTTTTGTTGGCTTATCAAATGACAGATCTGCTCAGGAAATTACAAATTCTGAATTACCTACTAAGAAAGAGAGTCTTCCTGAACTAAATCCGGAGGCTTCTTCCAAATCAGTTGACATGGTCAATAGTAAACCTGACATGCCCAGCCAACCTGACATGCTCAGGAGAGGGCTGCCTAACAATTCAGAAATTCCTTCAGAGAAATGTAATGACAGCCACCTTAGAGTTCAAGACACAGAGAAAGCCCATCTAGAAGGTTTCTCTGACAGAAATTTGGGACATGATATTAAGCAAGACAGCCAGGAAGTCACACAGATGAGTGTTGATCAGGGTCTTGAAGAGAAATCCCATCAAGAAGGTTGTTCTAACAGAAATTTGGGACATGATAATAAGCAAGATGACGAAGAAGTCACACAGATGAATGTTGACAAGGGTCTTGAAGAGAAACTGCATTGTTCTGACAGATCTTTGGAACGTGAACATGATATTAAGGAAGAAGGCCAGGAAGCCACAGAAATGAGTGTCGATATGGGTCTTGAAGAGAAATCCCAAGAAATCACAGAGGTGAATGTTGATCAGAATCTTGAAGAGAAATCGCATCTGGAAGGCTGTTCTGACAGAAATTTGGGACATGAAAATAAGCAAGATGACGAAGAATTAACTCAGAAGAATGTTGATCAGATTATTGAAGAGAAATCCCATCTGGAAGGTTGGTCTGACAGGAATTTGAACCTTGATAATAGGCACGATGATCAAGAACTCTCACAGTTAAATGTTGATCAGAGTCTTGAAGAGAAACCACATCATGAAGGCTTTTTTGACAGAACTTTGGGACATGATAATAAGCAAGATGACCAAGAAATGTCACAATTGAATGTTGATCAGTTTCTTGAAGAGAAACCACGTCAAGAAGACTGTCCTGATAGAAATTTGGGACACGATCTCAAGAAAGATGACCAAGAAATATCTCACATGCATGTTGATCAGAGTGTTGAAGAGAGAACCCATCTAGAAGGTTGTACTGATAGAACTGTGGAACATGATATTAAGCAAGATGACCAAGAAATCACACAGATGAATGTTGATCAGAGCCTTGAAGAGAATTCCCATCCAGAAGGCTTTTATGCCAGAACAATGGAACATGATATTAAGCAAGATGACCGAGAAATTGTGGATTTTGATCAGAGCCTTGAAACTTGTACAGAAAATATAGAGCAGGTGTGCCTTGAAACTAGTTCTTCAGATGGCTTGCATGATGTTGAGTGGGTTGGTGATGTTATTCAATTTGTTGAGGGGAAATCATTTTATCAGTCATGTTGTGTTGATGGAGTAACATATAGACTTCAGGATCGTGTTCTTTTTGGTTCCAATCGTGGGAAACTGACACCTTCAAAGCTTCAGTCCATGTGGGAGGATAGTGGAACTGGGGCTAAGTGGGTTAGTATCATCAGGTACTACTTTCCTAGCGACCTTCCAGAATATATTGACTGCCCATCCTTGCCTGATTGCAATGAGGTATATGAATCCAATCAAAATAGCACTGTAATGGCTGGCTTGATTCGAGGCCCCTGTGAAGTTTTTCCCACTGGAAAATTCAAGGAAGAGAGTGGAAGACGAGATCAATTATTACCCAATGCCAATATTGGATTACTCCCAGTTTTCCTATGCAACTGGTTCTACGATGAATCTAAGGGGCAATTTGAACAACTGTCCAGTTAG 3321 43.33 MSESVMEPVANLAATEPGEPQLGEKRSAENGGANGEFIEQASSKKSRLGIGAVCDLKRVAEIVLVLSTMATMRGGKKPSDVEVELMAEARDKLVEMCEGLAPKEIVERDGIGAVIEELGLNGKVKDQRLGFRGPRLTITEKMSLSKRKMEESKKFVAPPPAAYNPHPLHPNPSAVSENRSPASPLACMFTSSEKPGHLQGTTGGVPVSLPQDPISATTTSTSLQLRLPASEVRAPHVPSGGFTVNHYGRESTSAFPKAERAPNGIYPPQIQGNSSANHPLVNAPAWSIQNQSASLGKTGPDHKFPNQTSVNAQGTIDTSISRVTPQTATGIIPGSHQPLQNMSFAHAPSLPPNNHGEIARIVQKLLQPQLPDHPTWTPPSRDYMNKAVTCQGCQLTINEVDTVLICDACEKGFHLKCVQSPNQRAIPRGEWHCSRCLAISNGKPLPPKYGRVMRSNPPLKVPSNPTGVQLSSEKKGETMESKASQQRTTLNAGSGLQTPAETGSFGSNYAASVSDSKTSNVKEMHLNPSPAFGFTFVGLSNDRSAQEITNSELPTKKESLPELNPEASSKSVDMVNSKPDMPSQPDMLRRGLPNNSEIPSEKCNDSHLRVQDTEKAHLEGFSDRNLGHDIKQDSQEVTQMSVDQGLEEKSHQEGCSNRNLGHDNKQDDEEVTQMNVDKGLEEKLHCSDRSLEREHDIKEEGQEATEMSVDMGLEEKSQEITEVNVDQNLEEKSHLEGCSDRNLGHENKQDDEELTQKNVDQIIEEKSHLEGWSDRNLNLDNRHDDQELSQLNVDQSLEEKPHHEGFFDRTLGHDNKQDDQEMSQLNVDQFLEEKPRQEDCPDRNLGHDLKKDDQEISHMHVDQSVEERTHLEGCTDRTVEHDIKQDDQEITQMNVDQSLEENSHPEGFYARTMEHDIKQDDREIVDFDQSLETCTENIEQVCLETSSSDGLHDVEWVGDVIQFVEGKSFYQSCCVDGVTYRLQDRVLFGSNRGKLTPSKLQSMWEDSGTGAKWVSIIRYYFPSDLPEYIDCPSLPDCNEVYESNQNSTVMAGLIRGPCEVFPTGKFKEESGRRDQLLPNANIGLLPVFLCNWFYDESKGQFEQLSS 1106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9670525 9675154 - Conep14aG0120600.1 Cone14ag1182 453031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1182 1106 Gene3D - 957 1106 IPR043151 -
Cone14ag1182 1106 MobiDBLite consensus disorder prediction 545 578 - -
Cone14ag1182 1106 MobiDBLite consensus disorder prediction 459 474 - -
Cone14ag1182 1106 MobiDBLite consensus disorder prediction 545 588 - -
Cone14ag1182 1106 SMART BAH_4 978 1105 IPR001025 GO:0003682(InterPro)
Cone14ag1182 1106 MobiDBLite consensus disorder prediction 454 503 - -
Cone14ag1182 1106 MobiDBLite consensus disorder prediction 1 38 - -
Cone14ag1182 1106 MobiDBLite consensus disorder prediction 686 709 - -
Cone14ag1182 1106 Pfam BAH domain 979 1104 IPR001025 GO:0003682(InterPro)
Cone14ag1182 1106 MobiDBLite consensus disorder prediction 482 503 - -
Cone14ag1182 1106 ProSiteProfiles Zinc finger PHD-type profile. 387 439 IPR019787 -
Cone14ag1182 1106 MobiDBLite consensus disorder prediction 734 753 - -
Cone14ag1182 1106 CDD BAH 977 1105 - -
Cone14ag1182 1106 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 379 451 IPR013083 -
Cone14ag1182 1106 MobiDBLite consensus disorder prediction 646 670 - -
Cone14ag1182 1106 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 19 656 - -
Cone14ag1182 1106 SMART PHD_3 389 437 IPR001965 -
Cone14ag1182 1106 MobiDBLite consensus disorder prediction 623 670 - -
Cone14ag1182 1106 ProSitePatterns Zinc finger PHD-type signature. 390 436 IPR019786 -
Cone14ag1182 1106 ProSiteProfiles BAH domain profile. 978 1105 IPR001025 GO:0003682(InterPro)
Cone14ag1182 1106 Pfam PHD-finger 390 436 IPR019787 -
Cone14ag1182 1106 SUPERFAMILY FYVE/PHD zinc finger 380 446 IPR011011 -
Cone14ag1182 1106 MobiDBLite consensus disorder prediction 151 182 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1182 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0032 Cone-Chr8:202147 Cone14ag1182 Cone-Chr14:9670525 3.88E-06 dispersed
Cone14ag1182 Cone-Chr14:9670525 Cone15ag1199 Cone-Chr15:9576792 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g580 . . . . . . . . Cmo16g00950 . . . . . . . . . . . . . . . Cla10g00470 Cam10g0457 Cec10g0479 Cco10g0466 Clacu10g0477 Cmu10g1306 Cre10g0711 . . Cone14ag1182 Cone15ag1199 . Csa03g00472 . Cme06g02834 . Blo10g00851 . Bda12g00937 . . . . Sed08g2972 . . . . . . . . Bhi11g00572 Tan01g1753 Cmetu06g0787 . Hepe06g0022 Mch10g1340 . . . . . . . . Lsi05g00560 . Chy06g01850 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44799 PF03638 TCR 1.90E-11 No_clan Cone TR