Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1206 ATGAATTTGGCGAATAACAATTCCACTGATGAAGAAAAATCCAGCTTCTTCGAGTTTAAGCCTCATTTTAGAGCAAATATGGTTAGTGCGGATATGAACAATAAAAAAAATGAACAATCGATGCAAGTCCAAGTTCAAGATCAGGCTCATCCATTTTCATCGTCTTCATCTATGCTCACGAGTGAGATGCTCGTCCCTTCAGTTACTGTGGATCCCACAGAATTCGAAGAAGATGAATTTGACCAGAGACTGAATAAAATTAGTGGGATTAATTCTTCTATAGCTGGAGAGAGGCCCAACAATGATGGATATAATTGGCGAAAATACGGGCAGAAGCATGTGAAAGGGTGTGAATTTCCTCGAAGCTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAGCTTTTTGAACGATCTCATGATGGGCAAATAACCGATGTTGTTTACAAGGGTGCCCATGATCATCCTAAACCTCAGTCATGTAGTAGTACCCGTGTGTCCATCCAAGAAGAAGATGGTAAGCCTGAGGATTCTCGTGTTCTGGCAAATGATGATAGTAACCTAGATGAGGTTGATAATTATGATCCATTTTCAAAGCGGAGGAAAATGGAAAATAGCGGGTTCGATGTCTCAACGATGGCTAAGCCAATCAGAGAACCACGAGTTGTGGTTCAAACGTTGAGCGAAGTTGATATACTTGATGACGGGTATCGTTGGAGAAAATATGGGCAAAAAGTAGTGAGAGGAAATCCTAATCCAAGGAGTTATTACAAGTGCACAAATGTTGGATGTTCTGTTAGAAAACACGTGGAGAGGGCGTCACACGACCCGAAAGCCGTTATAACCACTTATGAAGGGAAACACAATCATGATGTTCCCATTGCAAAAACTAGTAGCCATGATATTGCGGCGGGCCCATCAAGGTTCCGATCAGAAGAAAGTGAAGCCATTAGCCTTAATCTTGGGGTTGGAATTCACACTGCCGCTCAAAATAGATCCAACGATTATAGACAATCCCTAAACTATGTAGTTTCTGAAAGCGAAACTCGAGAACGCCACTTTGACTTCAAGGTAACTCAAGCAAACACAGTCTCAGCGCATGCTAATGTTCTAAACAGAGGAATGAATTACAGAGAAGGCCATGGAATTGAAATTACTCCTTTGAGTCATTCCTCTTACCCGTATACGCTAAGCATGGGCAGAATAATATCAGGTCCCTAA 1224 41.34 MNLANNNSTDEEKSSFFEFKPHFRANMVSADMNNKKNEQSMQVQVQDQAHPFSSSSSMLTSEMLVPSVTVDPTEFEEDEFDQRLNKISGINSSIAGERPNNDGYNWRKYGQKHVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITDVVYKGAHDHPKPQSCSSTRVSIQEEDGKPEDSRVLANDDSNLDEVDNYDPFSKRRKMENSGFDVSTMAKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCSVRKHVERASHDPKAVITTYEGKHNHDVPIAKTSSHDIAAGPSRFRSEESEAISLNLGVGIHTAAQNRSNDYRQSLNYVVSESETRERHFDFKVTQANTVSAHANVLNRGMNYREGHGIEITPLSHSSYPYTLSMGRIISGP 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9812542 9816434 - Conep14aG0123800.1 Cone14ag1206 453055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1206 407 MobiDBLite consensus disorder prediction 170 207 - -
Cone14ag1206 407 FunFam WRKY transcription factor 90 160 - -
Cone14ag1206 407 Pfam WRKY DNA -binding domain 101 157 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1206 407 Pfam WRKY DNA -binding domain 235 292 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1206 407 SUPERFAMILY WRKY DNA-binding domain 98 159 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1206 407 Gene3D WRKY domain 221 287 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1206 407 FunFam WRKY transcription factor 33 221 287 - -
Cone14ag1206 407 ProSiteProfiles WRKY domain profile. 229 294 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1206 407 SMART WRKY_cls 234 293 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1206 407 SMART WRKY_cls 100 158 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1206 407 SUPERFAMILY WRKY DNA-binding domain 226 294 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1206 407 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 33 321 IPR044810 GO:0003700(InterPro)
Cone14ag1206 407 Gene3D WRKY domain 90 160 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1206 407 ProSiteProfiles WRKY domain profile. 95 159 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1206 407 MobiDBLite consensus disorder prediction 152 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1206 Cone-Chr14:9812542 Cone16ag0479 Cone-Chr16:6955697 4.05E-80 dispersed
Cone12ag1330 Cone-Chr12:10026135 Cone14ag1206 Cone-Chr14:9812542 1.70E-63 wgd
Cone14ag1206 Cone-Chr14:9812542 Cone15ag1223 Cone-Chr15:9724224 3.33E-40 wgd
Cone14ag1206 Cone-Chr14:9812542 Cone6ag0027 Cone-Chr6:172101 4.25E-148 wgd
Cone14ag1206 Cone-Chr14:9812542 Cone8ag1387 Cone-Chr8:10979428 4.14E-63 wgd
Cone14ag1206 Cone-Chr14:9812542 Cone9ag0026 Cone-Chr9:128238 6.79E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44800 PF04821 TIMELESS 2.70E-58 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1206 - - - 0.0