Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1209 ATGGATACGTCGGAGTACACAAAAATTTTGTTCAGTAAGATACAGAAAATAGAACCAGAGAATGTTACAAAGATCATTGGCTATCTCCTTCTACAAGACAATAGTGACAGAGAGATTATTCATCTAGCTTTAGGCCCTGACCAACTAATCCATGAAGTGATTTTCAAGGCGAAAACTGAGTTACAGCAGTTAGCTACCGCTTCATCATCACCCCCAATTTCACCTTCCCTGAACCCTCTTTCCTCACGGCCTTTTTTATCTCCCACGGTGTCCACAACCTTCCATGCCCCTGTCCCATATTGGGACCCCCAACAACTAGCAAACTGGCACAATTCTGATTTTATGCCCGGTTATGTCGATTCGGCATTGGAACTTCAGAAGCAATCCCACTTGTTGGGTCTAGAGGACCAAATGGAGGCGATTAATCTAGGCATTTTAGGGCTTTCGAAAGATGGGTACTTTGTCGATTCTACAATGGGCCAATTGGCTGGAGGTAGGAGCCGAAGGTTTTCTTCGAGCTTGCCGGATTATCCTGTTAAGATTTGTCATTATCATTTCAACAAAGGATTTTGCAAGCATGGAGATAATTGTAGATACTCACATGCTCTAGTAGCACATGAGAGCCTTTCGAACATATATGGAAATGATGGTAACAATGAGGACCTGATTTTTCGACCTGGGTCGATTGAGACTTTGGAGTTGGAAATCATTGGACTACTAAAATCGAGAAGGGGAAATCCGGTTTCTATTGCTTCTTTACCAATGGTTTATTTTGAGAGATATGGAAAGCTTCTTCAAGCAGATGGATACCTCGCTGAGAGCAAAAGGCATGGTAAAGTCGGTTATAGTTTGACTAGGCTCCTTGCTCGATTGAAAAACACTATTCGGCTTATTGACAGGCCTCATGGGCAGCATGCGGTTATTTTGGCGGAAGATGCTCCAAAGTACCTGGATAATAGAAGTGAGAGAAATGATCCCGGTCCGATTGTTAGCGGGTCCCGGCAGATATATTTGACATTTCCGGCTGAGAGTACTTTTACTGAAGATGATGTTTCCAATTACTTCAGCACTTTTGGTCTAGTTGAAGATGTTCGGATTCCATGTCAGCAGAAACGGATGTTCGGTTTTGTTACTTTTGTCAGTGCTGATACTGTGAGACTGATTCTGGCCAAGGGAAACCCATATTTTGTTTGCGGGGCCCGTGTTTTGGTCAAACCTTACCGGGAAAAATCTAAGCTTGTCGACAGGAAGTATCATGATAGAATCGAGCACCCGTTTTATTACTCCCCACACTATGTTGACTTAGATTCTGACATTCAATCAATGTCAAGAGGATATGAGACCTCTAGAATGTTGAAGAGGCAACTTATAGAAGAGCAAGAACAGGCCCTTGAACTTGAAAGGAGGAATCTTGCTGAGCTTAATTTGGTCAGAAGGCCTCTCTCTAATCTGCAGAATCTTGGATATTCAATGGATCAGCTACGAGTTTCTGAAGATAAGTTGAATTTCCCGAATCCCGAACAGTTCAATTATCTTCTGAACATTCTGAATAGTAGTAGCTCCACAAATAATAATAAGCCAAGCCACAATGACATTGAAAGTCAAGGACTGAATCTCCCGGATAGCCCATTTGCCCCATCAGTGGATAGTGGCATTTACACAGCCACATAG 1671 42.67 MDTSEYTKILFSKIQKIEPENVTKIIGYLLLQDNSDREIIHLALGPDQLIHEVIFKAKTELQQLATASSSPPISPSLNPLSSRPFLSPTVSTTFHAPVPYWDPQQLANWHNSDFMPGYVDSALELQKQSHLLGLEDQMEAINLGILGLSKDGYFVDSTMGQLAGGRSRRFSSSLPDYPVKICHYHFNKGFCKHGDNCRYSHALVAHESLSNIYGNDGNNEDLIFRPGSIETLELEIIGLLKSRRGNPVSIASLPMVYFERYGKLLQADGYLAESKRHGKVGYSLTRLLARLKNTIRLIDRPHGQHAVILAEDAPKYLDNRSERNDPGPIVSGSRQIYLTFPAESTFTEDDVSNYFSTFGLVEDVRIPCQQKRMFGFVTFVSADTVRLILAKGNPYFVCGARVLVKPYREKSKLVDRKYHDRIEHPFYYSPHYVDLDSDIQSMSRGYETSRMLKRQLIEEQEQALELERRNLAELNLVRRPLSNLQNLGYSMDQLRVSEDKLNFPNPEQFNYLLNILNSSSSTNNNKPSHNDIESQGLNLPDSPFAPSVDSGIYTAT 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9847765 9850867 - Conep14aG0124100.1 Cone14ag1209 453058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1209 556 Coils Coil 449 477 - -
Cone14ag1209 556 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 546 - -
Cone14ag1209 556 MobiDBLite consensus disorder prediction 522 541 - -
Cone14ag1209 556 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 341 412 - -
Cone14ag1209 556 Pfam RNA recognition motif 345 394 IPR000504 GO:0003723(InterPro)
Cone14ag1209 556 SMART rrm1_1 335 405 IPR000504 GO:0003723(InterPro)
Cone14ag1209 556 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 409 IPR000504 GO:0003723(InterPro)
Cone14ag1209 556 SUPERFAMILY CCCH zinc finger 175 202 IPR036855 GO:0046872(InterPro)
Cone14ag1209 556 SUPERFAMILY RNA-binding domain, RBD 345 426 IPR035979 GO:0003676(InterPro)
Cone14ag1209 556 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 179 201 IPR000571 GO:0046872(InterPro)
Cone14ag1209 556 Gene3D - 340 413 IPR012677 -
Cone14ag1209 556 ProSiteProfiles OST-type HTH domain profile. 228 311 IPR025605 -
Cone14ag1209 556 SMART c3hfinal6 176 203 IPR000571 GO:0046872(InterPro)
Cone14ag1209 556 CDD RRM_AtC3H46_like 336 405 IPR034365 -
Cone14ag1209 556 ProSiteProfiles Zinc finger C3H1-type profile. 176 204 IPR000571 GO:0046872(InterPro)
Cone14ag1209 556 MobiDBLite consensus disorder prediction 522 556 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1209 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1209 Cone-Chr14:9847765 Cone3ag1291 Cone-Chr3:31758499 9.12E-172 dispersed
Cone14ag1209 Cone-Chr14:9847765 Cone15ag1226 Cone-Chr15:9732489 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g619 . . . . Bpe09g00132 . . Bma13g01110 Cmo16g00984 . . . . . . . . . . . . . . . Cla10g00430 Cam10g0428 Cec10g0450 Cco10g0440 Clacu10g0435 Cmu10g1266 Cre10g0683 . . Cone14ag1209 Cone15ag1226 . Csa03g00438 . Cme06g02784 . . . Bda12g00954 . . . . Sed08g2938 . . . Cma16g00946 . Car16g00909 Cpe14g00769 . Bhi11g00494 Tan01g1811 . . . . . . . . . . . . Lsi05g00520 . Chy06g01879 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002118 2 2 1 2 1 1 3 1 1 1 1 1 3 1 1 3 1 4 3 1 1 2 2 2 2 2 1 11 6 2 65