Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1216 ATGGGCAAGGAAGATACATCGACTGTGGTCAGTGAGACAGTGGAAAATGGGATCAATAAGGTGGAGAAAACCAGTGAGACTGACAATAAGAAAAAAGGGAAGGAAAATGGTGGGGTAAAGGACATGGAAGAAGATCAGAAAACTGATAAGGAAGTAGAGACTAAGAAAATGGATGAAGACAGAGAAGTCAAGGAAGGAAAAGAAGTGAAAGAAGAAGCCAAGGAAGAGAAGAAAGGAAAAGAAGAATCTAAGGAAGAACCAATGGAGGAAGATACACATGTAGATGAGAAGGAGAAGAGTGGGGAAAAAGAGGATATCAAGGAAGAAGTGGAGAAGGTTGTCGGGGAAAAAAGGGAGGAAAAAGATAAAGGTGAAGAGAAGGTAGAAGAACCTAAAGAGGAAGAAGATAAAGATGAGGAGATGGTAGGAAAGGTTGACAAGGAAGAAGATAAAGTGGAAAAGAAGAATGAAAAAACCGAGCAGGTAGAAGTTAAAGATGATGAGAAGGCAGAAGAGCCTGAGCAGGAAGAAGATATAGAGGGAGAGAAGGTGGAAGAGCCTGAGGATGAAGAAGATAAAGATGAAGAGAAGGCAGAAAAACCGAAAGAGGATAAGAGATCAAAGAAACGTGCGAGGGGAAAAAGTGATAAAAAAGTCAAAGAAAAGAAGAAGGAAGTTGAAAAGAAGGAGCCTGAGCAACATACTCCTTTTTCTGATCGCCCAGTGCGTGAGCGCAAAACAGTCGAAAGGTTGGTGGCATCCATTGAAAGGGAGGCCGTCAAGGAATTCCAAATTGAAAAGGGCAGTGGAACCCCACTTAAAGATATACCTAATGTGGCATTTAAGTTGTCAAGGAAGAAGACAGATGATACCTTCAAGCTGCTTCATACGATTCTCTTTGGTAGGAGAGGGAAGGCAATTCAAGTGAAGAGCAATATCTTGAGGTTTTCTGGTTTTGTGTGGCCTGGAAATGAGGAAAAGCAGAAGAGTAGAGTGAAAGAGAAACTTGACAAATGTAATAAAGAGAAGTTGCTGGAATTTTGTGAACTTCTTGACCTCCCAATTGCTAGAGCTACAACGAGGAAGGAAGATATCATTGCAAAGCTGATAGACTTTTTGATGGCTCCTCATCCCACAACCACTGTGCTTCTTGCTGAAAACGAAAAGTCAAGCAAGGGACAGAAACGCAAGAGGGCAAGCAAAGGAGGTTCTTCAACTCCAGGAAGTACCAGCTCAAAACGATCATCAAAGAAGAGTGGAGGTACTTCAAAGAGTGATATGATGGACTCATCAGAAGGGGAAGATGAATCAGAAGAAGTGGAAAAGGAGGAAGAAGAACAACAAGAAGAAGAGAAGGATGAGGAAATTGAAAATGGTGTCCAGGAAAAGTCAGAGGATGAGATCCCTGAGCCCTCAGAAAGCGAGGAGAAAGAAGATGATCCAACAGATGAAGAATCTGAAGAAGAAAAGCCCAAACGGAGGTCCAAAGCTTCATCAAAGAAGAAGGAATCTGCTGGAAAAGCTAGAACCAAGAAAACTCCAGTTTCAGATAAATCTAGTCCAACACCAAAAAAGACAACAAAGCAATCATCAGCAAAACGCTCTAAGGTTGAAGATGACGGTGATACAAGTCCTAAGGTATTCTCAAGGAGGAAGAGTAATGAAAAAGTGCCCAAGGAGAAGGTCTCGAATTCAAAGAAATCTGCTTCCAAAGAAAAAAACGAGAAAAAGGTTGCTAAAGGAAAGGACAAGAGCAAAGAGGACAAAGTCAGGCCTAGCGATGATGAATTGAGAGATGCTATTTGTGAAATTCTTAAAGAAGTGGACTTCAATACGGCTACTTTCACGGACATTCTGAAGCTACTTGCTAAGAAGTTTGATATCGATCTCACCCCAAGAAAGTCATCCATAAAGCTTGTGATCCAAGAAGAGCTTACCAAACTAGCTGACGAAGCAGATGAAGAAGAAGATGGAGAAGGCGACGCCGCTGAGAAGAAAGAAGAAAAACAGTTGGCCGGTCAAGAGGTGGAAACCTAA 2037 41.83 MGKEDTSTVVSETVENGINKVEKTSETDNKKKGKENGGVKDMEEDQKTDKEVETKKMDEDREVKEGKEVKEEAKEEKKGKEESKEEPMEEDTHVDEKEKSGEKEDIKEEVEKVVGEKREEKDKGEEKVEEPKEEEDKDEEMVGKVDKEEDKVEKKNEKTEQVEVKDDEKAEEPEQEEDIEGEKVEEPEDEEDKDEEKAEKPKEDKRSKKRARGKSDKKVKEKKKEVEKKEPEQHTPFSDRPVRERKTVERLVASIEREAVKEFQIEKGSGTPLKDIPNVAFKLSRKKTDDTFKLLHTILFGRRGKAIQVKSNILRFSGFVWPGNEEKQKSRVKEKLDKCNKEKLLEFCELLDLPIARATTRKEDIIAKLIDFLMAPHPTTTVLLAENEKSSKGQKRKRASKGGSSTPGSTSSKRSSKKSGGTSKSDMMDSSEGEDESEEVEKEEEEQQEEEKDEEIENGVQEKSEDEIPEPSESEEKEDDPTDEESEEEKPKRRSKASSKKKESAGKARTKKTPVSDKSSPTPKKTTKQSSAKRSKVEDDGDTSPKVFSRRKSNEKVPKEKVSNSKKSASKEKNEKKVAKGKDKSKEDKVRPSDDELRDAICEILKEVDFNTATFTDILKLLAKKFDIDLTPRKSSIKLVIQEELTKLADEADEEEDGEGDAAEKKEEKQLAGQEVET 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9898688 9903568 + Conep14aG0124800.1 Cone14ag1216 453065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1216 678 SUPERFAMILY DEK C-terminal domain 587 645 - -
Cone14ag1216 678 MobiDBLite consensus disorder prediction 431 456 - -
Cone14ag1216 678 Gene3D - 582 647 - -
Cone14ag1216 678 MobiDBLite consensus disorder prediction 531 597 - -
Cone14ag1216 678 MobiDBLite consensus disorder prediction 195 210 - -
Cone14ag1216 678 MobiDBLite consensus disorder prediction 384 597 - -
Cone14ag1216 678 MobiDBLite consensus disorder prediction 647 678 - -
Cone14ag1216 678 FunFam DEK domain-containing chromatin associated protein 582 647 - -
Cone14ag1216 678 MobiDBLite consensus disorder prediction 137 168 - -
Cone14ag1216 678 MobiDBLite consensus disorder prediction 662 678 - -
Cone14ag1216 678 MobiDBLite consensus disorder prediction 19 130 - -
Cone14ag1216 678 MobiDBLite consensus disorder prediction 218 244 - -
Cone14ag1216 678 Pfam DEK C terminal domain 592 645 IPR014876 -
Cone14ag1216 678 Coils Coil 56 86 - -
Cone14ag1216 678 MobiDBLite consensus disorder prediction 1 244 - -
Cone14ag1216 678 Coils Coil 428 462 - -
Cone14ag1216 678 MobiDBLite consensus disorder prediction 400 427 - -
Cone14ag1216 678 MobiDBLite consensus disorder prediction 468 485 - -
Cone14ag1216 678 Coils Coil 145 165 - -
Cone14ag1216 678 MobiDBLite consensus disorder prediction 169 194 - -
Cone14ag1216 678 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 591 646 IPR014876 -
Cone14ag1216 678 PANTHER DEK PROTEIN 121 661 IPR044198 GO:0003677(InterPro)|GO:0005634(PANTHER)|GO:0006325(InterPro)|GO:0042393(PANTHER)|GO:2000779(PANTHER)
Cone14ag1216 678 MobiDBLite consensus disorder prediction 1 18 - -
Cone14ag1216 678 Coils Coil 103 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1216 K17046 - - rcu:8286838 419.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1216 Cone-Chr14:9898688 Cone19ag0222 Cone-Chr19:1406799 3.60E-37 dispersed
Cone14ag1216 Cone-Chr14:9898688 Cone15ag1237 Cone-Chr15:9784110 1.03E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g658 . . . . . . . Bma13g01112 . Cmo06g00688 . . . . . . . . . . . . . . Cla10g00437 Cam10g0436 Cec10g0458 Cco10g0447 Clacu10g0444 Cmu10g1275 Cre10g0691 . . Cone14ag1216 Cone15ag1237 . . . . . Blo10g00863 . Bda12g00961 . . . . . . . . . . . Cpe14g00791 . . . . . . . . . . . . . . . Lsi05g00493 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007248 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 2 1 36