Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1217 ATGGCGGACTCGGACAACGAATCAGGAGGAGGACATACGGCGGGAATGAACAGCGAGCTATCGCCACGAGAGCAGGACAGGCTGTTGCCGATCGCTAACGTGAGCAGGATCATGAAGAAAGCACTTCCAGCGAACGCGAAGATCTCGAAGGACGCAAAGGAGACGGTTCAGGAGTGCGTATCGGAGTTCATAAGCTTCATCACGGGAGAAGCTTCGGACAAGTGCCAGAGAGAGAAGCGGAAGACGATCAACGGCGACGATTTGCTTTGGGCGATGACGACGTTAGGTTTCGAGGATTACGTGGAGACGCTCAAGGTTTACTTGCTGAGGTTCAGAGAGATGGAAGGAGAGAAGAACGCGATGGCGGCGCGTGATAAAGATGGCGGAGGGGGTAGCTTGGGGAATGGTGGTGTTACTGCTACAGGTGGGAGTAGCAGTACTAGCTCTGGGTTTAGTAGGGATGGTGGGACCAGTGGAGTATATGGGAGCGGAACGGGAATGATGATGATGATGGGGCAACACAAACATCAGCAGGGCCACGTGTACGGCTCAAGCGGGTTTCATCAGATGGCTGTGAGTGGTGGGCTGAGTAGGAGTGGATCCGGCCATTCTGGGCCTGGGTCTAATTCAAGTAGGCCCATCTAG 645 54.57 MADSDNESGGGHTAGMNSELSPREQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVETLKVYLLRFREMEGEKNAMAARDKDGGGGSLGNGGVTATGGSSSTSSGFSRDGGTSGVYGSGTGMMMMMGQHKHQQGHVYGSSGFHQMAVSGGLSRSGSGHSGPGSNSSRPI 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9905417 9907046 + Conep14aG0124900.1 Cone14ag1217 453066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1217 214 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1217 214 MobiDBLite consensus disorder prediction 122 158 - -
Cone14ag1217 214 SUPERFAMILY Histone-fold 25 127 IPR009072 GO:0046982(InterPro)
Cone14ag1217 214 Gene3D Histone, subunit A 16 137 IPR009072 GO:0046982(InterPro)
Cone14ag1217 214 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Cone14ag1217 214 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Cone14ag1217 214 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Cone14ag1217 214 MobiDBLite consensus disorder prediction 192 214 - -
Cone14ag1217 214 FunFam Nuclear transcription factor Y subunit B-3 17 137 - -
Cone14ag1217 214 MobiDBLite consensus disorder prediction 1 25 - -
Cone14ag1217 214 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Cone14ag1217 214 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 164 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone14ag1217 214 MobiDBLite consensus disorder prediction 137 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1312 Cone-Chr12:9924263 Cone14ag1217 Cone-Chr14:9905417 3.02E-63 dispersed
Cone14ag1217 Cone-Chr14:9905417 Cone3ag0290 Cone-Chr3:1505735 1.31E-56 dispersed
Cone14ag1217 Cone-Chr14:9905417 Cone14ag1222 Cone-Chr14:9927622 6.86E-36 proximal
Cone1ag0062 Cone-Chr1:313120 Cone14ag1217 Cone-Chr14:9905417 1.71E-45 wgd
Cone14ag1217 Cone-Chr14:9905417 Cone15ag1238 Cone-Chr15:9791392 1.14E-102 wgd
Cone14ag1217 Cone-Chr14:9905417 Cone8ag1366 Cone-Chr8:10907603 1.37E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44802 PF14767 RPA_interact_M 1.30E-26 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1217 K08065 - mdm:103439543 245.743