Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1222 ATGCCGATAGCCAACGTGATCCGTATCATGCGTCGGATTCTCCCGTCTCATGCAAAAATCTCAGATGATGCGAAAGAGACAATTCAAGAATGTGTGTCGGAGTATATAAGCTTTATAACTGGAGAGGCTAATGAACGGTGCCAGCGTGAGCAACGAAAGACGGTCACAGCTGAGGATGTTCTTTGGGCCATGGGGAAACTGGGCTTCGATGATTATATCGAGCCGCTTACTCTGTTCCTCAACTGGTACCGTGAGTCTGAGAATGATCAGACTCGAGGGGAGCAGCCCATTTTGAGAAGGGGTGTTGATTATAGGCCTCAAGTTCCTTTGATGGGTCCTTACATGCCAGGATTTTCGATGGGTCAAGTGCCGGGGGCAGGGATGTTTGATGCGGCGGCTGCTATGGGGTTACATTACAACGCTGGACCTAGTGTCGAGGCACCTGCCGGGAATGGTATGGGAAATAACTTTGATCCATATGGTCAATTTAAATAA 495 48.69 MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTLFLNWYRESENDQTRGEQPILRRGVDYRPQVPLMGPYMPGFSMGQVPGAGMFDAAAAMGLHYNAGPSVEAPAGNGMGNNFDPYGQFK 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9927622 9928116 + Conep14aG0125400.1 Cone14ag1222 453071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1222 164 ProSitePatterns NF-YB/HAP3 subunit signature. 31 47 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1222 164 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 64 IPR003958 -
Cone14ag1222 164 SUPERFAMILY Histone-fold 1 93 IPR009072 GO:0046982(InterPro)
Cone14ag1222 164 Gene3D Histone, subunit A 1 101 IPR009072 GO:0046982(InterPro)
Cone14ag1222 164 FunFam Nuclear transcription factor Y subunit B-6 1 102 - -
Cone14ag1222 164 PRINTS CCAAT-binding transcription factor subunit A signature 28 46 - -
Cone14ag1222 164 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Cone14ag1222 164 PRINTS CCAAT-binding transcription factor subunit A signature 47 65 - -
Cone14ag1222 164 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 92 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1222 Cone-Chr14:9927622 Cone15ag1243 Cone-Chr15:9811904 6.34E-105 dispersed
Cone14ag1217 Cone-Chr14:9905417 Cone14ag1222 Cone-Chr14:9927622 6.86E-36 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44803 PF06232 ATS3 4.90E-51 CL0321 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1222 K08065 - csv:116402762 219.164