Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1229 ATGAACAATCCACGTTCTGCTTGGGCACTCGCACGTACTCTCCCACGTGCCTTATCTACGTTGACCTCCGCCACTATCATCGCCGACGCAGCGGCCGCCGCCGCTGTCACCTCTAGCTTTCCTTTGAAGAACGTGACGAAATTGAACTTTGAAACAGCGCTTGCTGAGCTCAGGAACCATGTCCGAGCTGCAGACTTCGTCGCGATCGACCTCGAGATGACTGGAGTGACCAGCGCTCCTTGGCGTGAATCCTTCGAGTTCGATCGGTTTGACGTTCGCTACCTCAAAGTCAAGGACTCTGCCGAGAAGTTCGCCGTCGTTCAGTTCGGCGTCTGTCCCTTCCGTTGGGACTCCTCCAAGCATTCCTTCATTGCTCATCCGCATAATTTTTATGTTTTTCCTCGTCAAGAGCTTCAAATTGATGGCCCTGCTTATGAATTTCTCTGCCAGTCCGCATCTATCGACTTCTTAGCTAAATACCAGTTCGATTTCAATGCTTGCATTCATGAAGGAATTTCTTATTTATCCAGAGCACAAGAAGAAGAAGCACTTCGAAGCTTGAACTTAGCACAGGAAGATGAGGTATTGAATGCCCAGCATATTGCGGAGAATAAAATTAGAGAGGAACGGTTAGTTAACATGACTGATATTCTGTTTACGGAACGAATGAAGACTAGAATTTTTCAATGGCATGATGGATTGTTAAGGGAAGGTAATGGGGAATTCCGGTTTGAGGGAAACTCAAGCGAATCTAAACAAGAATTTCAGACCGTTTTCTTTAAAATGCGCCCTGCTCTTAGTTTGAACGGGTTCACTTCTCGTCAGATGAGATTGATTCAATTGGTAATTAGAAAGCATTTTAAAGATCTTTGCTTTACTCGTGTTAATGGTGAGAATGCATGTTTACAACAACTAATAGTCTATACAGATTCTGAGGATGATAGGAACAGACTTATGAAAGAGGTGAAAGATGAGCAGAAGAGAGGTGAAGAAATGAAGATCCAAGCGGCTATCGGATTTCGCCATGTTATCGATCTACTTTCATCAGAGAAGAAGCTGGTTGTTGGTCATAATTGCTTCTTGGATATCGCACATGTATATAACAAATTCATAGGTCCTCTTCCTTCAACCCCAGAAGAATTCGTCTTTTCTCTTAGTAAACACTTACCGGATATAGTTGACACGAAAATACTGTTGAATTCCAACCATTTGCTTAAACAGAGGATGAAGAAGTCAAGCACATCTTTATCCTCTGCATTTGCCTTATTATGCCCTCAAATTGCTCTTAGATCCGAAAATCTGCATTTTAACTCGGGTGTTCAAGTGGAGGTTCAAGTTGATGATTTGAGATCCTTAAATTGGAATTCTGGAGCCAAGCACGAAGCAGGGTATGATGCTTTCATGACAGGATGTGTCTTTGCTCAATCATGCAATCATCTAGGAGTTGACTTTTACCTTTCTTCTTCTTCTTCAACCTCTGAAAAATGGGCTCACAATGAGAACCTCCAAAAGCACATCAACCATCTCTATCTCAGTTGGAATAACGCTGAAATTATTGATCTCCGTACGGGTAATCGAATTTCTGATTCTTTAGAATCATCATCATCATCATATTATAACCTGAAAACCCGTTATCCAAAAATTAATTTTGAGAGCATTGTTCTGATCTGGGGATTCCCTTCTGAGCTCAAAGCTAGGAAGATCAGAGAATGCATTTCTAAAGTATTTGGCCCAATCTCCATTGTTTCTGTCTACCATATAGACGAAAGTGCCGTTTTTGTCCAATTTCGAAAACCAGAATATGTAACTGACTTTCTACTTTTAAAGGAAAGCTTAGAGGCCCATAAGGATCTCATCTCTGTTTTGCATCCTTTGGCCGAAATATTAGAAGGTGGACAAACTCAGGTTGGAGATTATGAAACATATAAGGAGATTTGTAGCTCGCCTGTTTCGAAAATCCTTTTTGCTAATCAGGCAGAAGCAATTGGTACTAAATGGAAGAAGAAATTGTTGCAGAAACTGGAAGTAGATGATGCAAGGAATAATAAGAAAGCCGAGCCAGACCGGACTGATGTGAGGAATGATATCTTAGACTCTTTATGTGCTGTAGAAGGTAATAGATAG 2124 41.53 MNNPRSAWALARTLPRALSTLTSATIIADAAAAAAVTSSFPLKNVTKLNFETALAELRNHVRAADFVAIDLEMTGVTSAPWRESFEFDRFDVRYLKVKDSAEKFAVVQFGVCPFRWDSSKHSFIAHPHNFYVFPRQELQIDGPAYEFLCQSASIDFLAKYQFDFNACIHEGISYLSRAQEEEALRSLNLAQEDEVLNAQHIAENKIREERLVNMTDILFTERMKTRIFQWHDGLLREGNGEFRFEGNSSESKQEFQTVFFKMRPALSLNGFTSRQMRLIQLVIRKHFKDLCFTRVNGENACLQQLIVYTDSEDDRNRLMKEVKDEQKRGEEMKIQAAIGFRHVIDLLSSEKKLVVGHNCFLDIAHVYNKFIGPLPSTPEEFVFSLSKHLPDIVDTKILLNSNHLLKQRMKKSSTSLSSAFALLCPQIALRSENLHFNSGVQVEVQVDDLRSLNWNSGAKHEAGYDAFMTGCVFAQSCNHLGVDFYLSSSSSTSEKWAHNENLQKHINHLYLSWNNAEIIDLRTGNRISDSLESSSSSYYNLKTRYPKINFESIVLIWGFPSELKARKIRECISKVFGPISIVSVYHIDESAVFVQFRKPEYVTDFLLLKESLEAHKDLISVLHPLAEILEGGQTQVGDYETYKEICSSPVSKILFANQAEAIGTKWKKKLLQKLEVDDARNNKKAEPDRTDVRNDILDSLCAVEGNR 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 9993588 9996430 - Conep14aG0126100.1 Cone14ag1229 453078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1229 707 SUPERFAMILY Ribonuclease H-like 42 483 IPR012337 -
Cone14ag1229 707 Pfam CAF1 family ribonuclease 45 473 IPR006941 -
Cone14ag1229 707 Coils Coil 308 335 - -
Cone14ag1229 707 Gene3D - 242 525 IPR036397 GO:0003676(InterPro)
Cone14ag1229 707 Gene3D - 44 218 IPR036397 GO:0003676(InterPro)
Cone14ag1229 707 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 42 661 IPR051181 GO:0000175(PANTHER)|GO:0003723(PANTHER)|GO:0005737(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1229 K01148 - - mdm:103447144 869.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1229 Cone-Chr14:9993588 Cone15ag1259 Cone-Chr15:9920392 4.87E-142 dispersed
Cone14ag1229 Cone-Chr14:9993588 Cone15ag1253 Cone-Chr15:9879057 2.07E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g677 . . . . Bpe09g00121 . . Bma13g01121 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1229 Cone15ag1253 . Csa03g00422 . Cme06g02768 . . . Bda12g00970 . . . . . . . . . . . Cpe14g00784 . Bhi11g00474 . . . . . . . . . . . . . . . Chy06g01891 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009803 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 31