Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1241 ATGGGTTCTGCTTCAGCTGTGGATTTAATGGAGTCTCCCTCAGTCGTTCATTTTTCCGGATTTCACATGGATAATTTAAAGCAAAATATTGTACAGATAGAGCGACCTACAGTCTCGGAAGCTGAAAACATACACAGACAACCCTTTGTAATTGGGGTTGCTGGTGGCGCGGCCTCTGGAAAGACTACAGTCTGTGATTTGATAATTCAGCAGCTTCATGACCAGCGTGTTGTTCTTGTTAGCCAGGATTCCTTCTATCATAATTTGACAACAGAGGAGCTTACACAAGTACAGGACTACAACTTTGACCATCCGGATGCATTTGACACAGAGCAGCTTTTGAGTTCAATGCAGAAGTTGAGGCACGGGCAGTCTGTAGATATTCCAAACTACGACTTCAAAAGCTACAAAAACAACGTAGTTCCAGCAAGAAGGGTAAACCCTGCAGATGTTATCATACTGGAAGGAATACTTGTTTTCCATGATCCTCGTGTTCGCGAGTTGATGAATATGAAGATATTTGTTGATATAGATGCTGATGTTCGTCTGGCTAGAAGGATAAAACGTGATACTGTTGAGAAGAGTAGAGATATTGCTGCCGTACTTGATCAGTACTCAAAATTCGTAAAGCCGGCTTTTGATGACTTCATTCTTCCAACAAAGAAGTATGCTGACATTATCATCCCTCGAGGAGGAGATAATCATGTTGCTATTGACCTGATTGTACAACATATTCGAACAAAGCTTGGTCAACATGACCTCTGTAAAATATACCCTAACTTATACGTCATTCCAACAACTTTTCAGATACGGGGTATGCATACCCTTATACGAGACTCTGAAACAACCAAGCATGATTTTGTATTCTATGCTGATCGATTAATTCGTCTGGTTGTTGAACATGGTCTTGGACATCTACCATTTATAGAAAAGCCTGTCATCACTCCAACTGGGTCCGTCTATACTGGTGTAGACTTCTGTAAGAGGTTATGTGGTGTCTCTGTTATCAGAAGTGGGGAGAGTATGGAGAATGCTTTACGAGCTTGTTGTAAAGGCATCAAGATTGGGAAGATTCTCATTCATAGGGAAGGTGACAATGGCATGGAGTTAATATATGAAAAATTACCCAAGGACATCTCAGATAGACATGTTCTTCTATTGGATCCAATTCTAGGCACAGGGAACTCTGCTGTTCATGCTATTTCATTGCTAATAAGAAAGGGTGTTCCAGAATCCAATATTATATTTCTCAATCTCATATCTGCACCTCAGGGAGTCCATGTGGTTTGCAAAAAGTTTCCAAGGATAAAGATTGTGACTTCAGAGATAGAGATGGGCTTGAATGAACATTTCCGTGTGATTCCAGGCATGGGAGAGTTCGGAGACAGGTATTTTGGAACTGATGAAGATGATGTACAAATGGTGGTAGTTGCCCCTTCAGATAATAGTTCTTCAGGTTGA 1461 40.93 MGSASAVDLMESPSVVHFSGFHMDNLKQNIVQIERPTVSEAENIHRQPFVIGVAGGAASGKTTVCDLIIQQLHDQRVVLVSQDSFYHNLTTEELTQVQDYNFDHPDAFDTEQLLSSMQKLRHGQSVDIPNYDFKSYKNNVVPARRVNPADVIILEGILVFHDPRVRELMNMKIFVDIDADVRLARRIKRDTVEKSRDIAAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIPTTFQIRGMHTLIRDSETTKHDFVFYADRLIRLVVEHGLGHLPFIEKPVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGMELIYEKLPKDISDRHVLLLDPILGTGNSAVHAISLLIRKGVPESNIIFLNLISAPQGVHVVCKKFPRIKIVTSEIEMGLNEHFRVIPGMGEFGDRYFGTDEDDVQMVVVAPSDNSSSG 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10030719 10034882 - Conep14aG0127300.1 Cone14ag1241 453090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1241 486 FunFam Uridine kinase 45 251 - -
Cone14ag1241 486 Gene3D - 252 467 IPR029057 -
Cone14ag1241 486 SUPERFAMILY PRTase-like 251 468 IPR029057 -
Cone14ag1241 486 Gene3D - 44 251 IPR027417 -
Cone14ag1241 486 PANTHER URIDINE KINASE 40 406 - GO:0005737(PANTHER)
Cone14ag1241 486 FunFam Uridine kinase 252 467 - -
Cone14ag1241 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 241 IPR027417 -
Cone14ag1241 486 CDD UMPK 50 248 IPR000764 -
Cone14ag1241 486 Pfam Uracil phosphoribosyltransferase 265 467 - -
Cone14ag1241 486 Pfam Phosphoribulokinase / Uridine kinase family 50 236 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Cone14ag1241 486 CDD PRTases_typeI 325 440 IPR000836 -
Cone14ag1241 486 NCBIfam uridine kinase 48 248 IPR000764 -
Cone14ag1241 486 PRINTS Uridine kinase signature 216 229 - -
Cone14ag1241 486 PRINTS Uridine kinase signature 48 65 - -
Cone14ag1241 486 PRINTS Uridine kinase signature 194 205 - -
Cone14ag1241 486 PRINTS Uridine kinase signature 123 138 - -
Cone14ag1241 486 PRINTS Uridine kinase signature 78 89 - -
Cone14ag1241 486 PRINTS Uridine kinase signature 180 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1241 K00876 - - cit:102611190 837.795
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1241 Cone-Chr14:10030719 Cone16ag0986 Cone-Chr16:9734631 1.90E-250 dispersed
Cone9ag0002 Cone-Chr9:16407 Cone14ag1241 Cone-Chr14:10030719 2.21E-115 transposed
Cone14ag1241 Cone-Chr14:10030719 Cone15ag1266 Cone-Chr15:9970346 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g781 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1241 Cone15ag1266 . Csa07g01059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g01088
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone20ag0355 . 33 192 PRT Gene Family AT1G80050 75.0 3.2e-64 241.9
Cone6ag0691 . 30 180 PRT Gene Family AT1G80050 77.5 9.3e-64 240.4
Cone17ag1015 . 33 192 PRT Gene Family AT1G80050 75.0 3.5e-63 238.4
Cone12ag0366 . 30 180 PRT Gene Family AT1G80050 75.5 1.5e-61 233.0
Cone9ag0694 . 30 180 PRT Gene Family AT1G80050 76.2 1.9e-61 232.6
Cone20ag0230 . 107 256 PRT Gene Family AT1G80050 72.0 1.7e-57 219.5
Cone20ag0355 . 1 148 PRT Gene Family AT5G11160 81.8 2.6e-64 242.3
Cone17ag1015 . 1 148 PRT Gene Family AT5G11160 81.8 3.4e-64 241.9
Cone9ag0694 . 8 145 PRT Gene Family AT5G11160 74.6 7.5e-56 214.2
Cone20ag0230 . 85 222 PRT Gene Family AT5G11160 75.4 2.2e-55 212.6
Cone12ag0366 . 8 145 PRT Gene Family AT5G11160 73.2 1.8e-54 209.5
Cone6ag0691 . 8 145 PRT Gene Family AT5G11160 73.9 2.4e-54 209.1
Cone20ag0230 . 78 256 PRT Gene Family AT1G27450 82.7 7.4e-81 297.4
Cone12ag0366 . 1 180 PRT Gene Family AT1G27450 73.3 1.6e-72 269.6
Cone9ag0694 . 7 180 PRT Gene Family AT1G27450 73.6 3.7e-72 268.5
Cone6ag0691 . 7 180 PRT Gene Family AT1G27450 73.6 1.4e-71 266.5
Cone20ag0355 . 11 183 PRT Gene Family AT1G27450 70.5 2.7e-67 252.3
Cone17ag1015 . 11 183 PRT Gene Family AT1G27450 69.9 3.0e-66 248.8
Cone3ag1203 . 83 568 PRT Gene Family AT2G16570 83.2 1.7e-237 819.3
Cone12ag1199 . 77 559 PRT Gene Family AT2G16570 82.3 1.1e-231 800.0
Cone8ag1246 . 71 556 PRT Gene Family AT2G16570 80.4 4.2e-228 788.1
Cone3ag1203 . 86 568 PRT Gene Family AT4G34740 84.3 1.5e-238 822.8
Cone12ag1199 . 41 559 PRT Gene Family AT4G34740 77.4 2.5e-228 788.9
Cone8ag1246 . 74 556 PRT Gene Family AT4G34740 80.0 1.4e-226 783.1
Cone12ag1199 . 10 532 PRT Gene Family AT4G38880 69.3 5.1e-199 691.4
Cone8ag1246 . 47 529 PRT Gene Family AT4G38880 71.3 7.3e-198 687.6
Cone3ag1203 . 54 537 PRT Gene Family AT4G38880 71.6 3.1e-196 682.2
Cone20ag0230 . 78 256 PRT Gene Family AT1G27450 82.7 7.4e-81 297.4
Cone12ag0366 . 1 180 PRT Gene Family AT1G27450 73.3 1.6e-72 269.6
Cone9ag0694 . 7 180 PRT Gene Family AT1G27450 73.6 3.7e-72 268.5
Cone6ag0691 . 7 180 PRT Gene Family AT1G27450 73.6 1.4e-71 266.5
Cone20ag0355 . 11 183 PRT Gene Family AT1G27450 70.5 2.7e-67 252.3
Cone17ag1015 . 11 183 PRT Gene Family AT1G27450 69.9 3.0e-66 248.8
Cone20ag0355 . 33 192 PRT Gene Family AT1G80050 75.0 3.2e-64 241.9
Cone6ag0691 . 30 180 PRT Gene Family AT1G80050 77.5 9.3e-64 240.4
Cone17ag1015 . 33 192 PRT Gene Family AT1G80050 75.0 3.5e-63 238.4
Cone12ag0366 . 30 180 PRT Gene Family AT1G80050 75.5 1.5e-61 233.0
Cone9ag0694 . 30 180 PRT Gene Family AT1G80050 76.2 1.9e-61 232.6
Cone20ag0230 . 107 256 PRT Gene Family AT1G80050 72.0 1.7e-57 219.5
Cone12ag0366 . 1 97 PRT Gene Family AT4G22570 84.7 2.1e-43 172.2
Cone6ag0691 . 6 97 PRT Gene Family AT4G22570 87.0 2.7e-43 171.8
Cone9ag0694 . 6 97 PRT Gene Family AT4G22570 84.8 1.3e-42 169.5
Cone20ag0230 . 80 174 PRT Gene Family AT4G22570 78.9 2.8e-40 161.8
Cone17ag1015 . 11 100 PRT Gene Family AT4G22570 78.9 3.8e-37 151.4
Cone20ag0355 . 11 100 PRT Gene Family AT4G22570 78.9 3.8e-37 151.4
Cone12ag0366 . 1 96 PRT Gene Family AT4G12440 84.4 2.3e-41 165.2
Cone6ag0691 . 1 96 PRT Gene Family AT4G12440 83.3 3.3e-40 161.4
Cone9ag0694 . 1 96 PRT Gene Family AT4G12440 81.3 1.6e-39 159.1
Cone20ag0230 . 78 173 PRT Gene Family AT4G12440 79.2 1.1e-38 156.4
Cone17ag1015 . 4 99 PRT Gene Family AT4G12440 78.1 5.9e-37 150.6
Cone20ag0355 . 4 99 PRT Gene Family AT4G12440 78.1 5.9e-37 150.6
Cone20ag0355 . 1 148 PRT Gene Family AT5G11160 81.8 2.6e-64 242.3
Cone17ag1015 . 1 148 PRT Gene Family AT5G11160 81.8 3.4e-64 241.9
Cone9ag0694 . 8 145 PRT Gene Family AT5G11160 74.6 7.5e-56 214.2
Cone20ag0230 . 85 222 PRT Gene Family AT5G11160 75.4 2.2e-55 212.6
Cone12ag0366 . 8 145 PRT Gene Family AT5G11160 73.2 1.8e-54 209.5
Cone6ag0691 . 8 145 PRT Gene Family AT5G11160 73.9 2.4e-54 209.1
Cone17ag0764 . 1 143 PRT Gene Family AT1G71750 63.2 1.7e-46 183.3
Cone14ag1241 . 16 470 PRT Gene Family AT1G55810 84.2 5.0e-224 774.2
Cone15ag1266 . 16 470 PRT Gene Family AT1G55810 84.2 2.5e-223 771.9
Cone16ag0986 . 69 491 PRT Gene Family AT1G55810 78.0 2.6e-196 682.2
Cone18ag1424 . 19 509 PRT Gene Family AT1G55810 68.9 7.6e-196 680.6
Cone2ag0051 . 63 437 PRT Gene Family AT1G55810 79.2 1.4e-173 606.7
Cone9ag0002 . 16 229 PRT Gene Family AT1G55810 70.2 4.3e-82 302.8
Cone15ag1266 . 67 467 PRT Gene Family AT3G27440 77.1 2.9e-181 632.1
Cone14ag1241 . 67 467 PRT Gene Family AT3G27440 76.1 4.6e-179 624.8
Cone16ag0986 . 89 491 PRT Gene Family AT3G27440 74.4 7.3e-177 617.5
Cone18ag1424 . 80 509 PRT Gene Family AT3G27440 70.0 2.2e-173 605.9
Cone2ag0051 . 83 437 PRT Gene Family AT3G27440 74.9 6.0e-155 544.7
Cone9ag0002 . 67 229 PRT Gene Family AT3G27440 63.8 9.3e-55 211.8
Cone18ag1424 . 1 509 PRT Gene Family AT3G27190 81.0 1.1e-240 829.7
Cone16ag0986 . 1 491 PRT Gene Family AT3G27190 84.5 2.7e-239 825.1
Cone2ag0051 . 1 437 PRT Gene Family AT3G27190 83.5 2.4e-211 732.3
Cone15ag1266 . 4 469 PRT Gene Family AT3G27190 73.3 2.3e-206 715.7
Cone14ag1241 . 4 469 PRT Gene Family AT3G27190 73.1 4.3e-205 711.4
Cone9ag0002 . 3 229 PRT Gene Family AT3G27190 59.4 5.8e-69 259.2
Cone13ag1356 . 63 294 PRT Gene Family AT3G53900 76.0 3.2e-102 369.0
Cone19ag1352 . 4 285 PRT Gene Family AT3G53900 64.2 2.1e-101 366.3
Cone15ag1266 . 1 470 PRT Gene Family AT4G26510 82.5 1.6e-228 789.3
Cone14ag1241 . 1 470 PRT Gene Family AT4G26510 82.6 1.3e-227 786.2
Cone16ag0986 . 5 491 PRT Gene Family AT4G26510 72.3 2.9e-206 715.3
Cone18ag1424 . 11 509 PRT Gene Family AT4G26510 71.3 1.1e-205 713.4
Cone2ag0051 . 5 437 PRT Gene Family AT4G26510 72.7 2.0e-183 639.4
Cone9ag0002 . 1 229 PRT Gene Family AT4G26510 68.0 1.1e-83 308.1
Cone18ag1424 . 1 509 PRT Gene Family AT5G40870 81.6 1.3e-241 832.8
Cone16ag0986 . 1 491 PRT Gene Family AT5G40870 84.1 9.2e-240 826.6
Cone2ag0051 . 1 437 PRT Gene Family AT5G40870 84.7 1.9e-213 739.2
Cone15ag1266 . 3 471 PRT Gene Family AT5G40870 72.0 3.0e-206 715.3
Cone14ag1241 . 3 471 PRT Gene Family AT5G40870 71.9 1.1e-203 706.8
Cone9ag0002 . 46 229 PRT Gene Family AT5G40870 70.7 1.8e-70 264.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61