Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1269 ATGGCGATGTTACTGAAGAAAGTATGGGAATCGGTGTCCATCCGTTCTTCAGGCTCGAAATCGGACTTCCCGCCTTGCGATCGTCAGTGCTTCGTGGAATTCTCTTTGCGAGAATTCGATCGGATACCGTCGGACATACTGATGCAAATCCTGAAAATTATTGGTCCCAAAGAGGCAGCTAAAATGAGTTTGGTCTGCAAGTCATGGAAATCACTGGTTTCTGATAATCTGCTCTGGATTTTCTTCCTCCACGTTCAGCAGGAGCCTTGGGACTCCATCTTCTTCGCAGAAAGCCATTTGGCCTCGGGCTATCCTCTTCAGAAAGTGGAACTGTGTCGATCCATGTATGAGTTTGATTTTACTTGTTCTGCTGATGAAAGCTGGTGGTTCTGGTTATTGCAAATTTGGCTGGAGCAAATACGCATGTCCGTCTGGACAGTCAGCAACATTTTTGGTGAGGAATTTGGTAACATCGAATCTCCAATGTACTCTAGACTGCGACATTTTTTCACAACTATTTATAGCAGAATGCAGGTGAAAGCATCATTGCAGCCAGTGGTTGTGTTTCTACCAAATTGTCATTATGATGGTCAGATTCTCTGTGTTAGCCGTTGA 615 44.55 MAMLLKKVWESVSIRSSGSKSDFPPCDRQCFVEFSLREFDRIPSDILMQILKIIGPKEAAKMSLVCKSWKSLVSDNLLWIFFLHVQQEPWDSIFFAESHLASGYPLQKVELCRSMYEFDFTCSADESWWFWLLQIWLEQIRMSVWTVSNIFGEEFGNIESPMYSRLRHFFTTIYSRMQVKASLQPVVVFLPNCHYDGQILCVSR 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10165879 10167293 - Conep14aG0130100.1 Cone14ag1269 453118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1269 204 Gene3D - 32 104 - -
Cone14ag1269 204 ProSiteProfiles F-box domain profile. 36 82 IPR001810 GO:0005515(InterPro)
Cone14ag1269 204 Pfam F-box domain 39 80 IPR001810 GO:0005515(InterPro)
Cone14ag1269 204 SMART fbox_2 42 82 IPR001810 GO:0005515(InterPro)
Cone14ag1269 204 SUPERFAMILY F-box domain 39 117 IPR036047 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1269 K16616 - - rcu:8267936 185.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1269 Cone-Chr14:10165879 Cone15ag1295 Cone-Chr15:10138307 2.30E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g782 . . . . . . Bma10g00615 . . Cmo06g00672 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1269 Cone15ag1295 . . . . Blo07g00858 . Bda05g00660 . . Bpe03g00737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054546 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1