Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1276 ATGTCTGCCGCGGAATACACCGATCATAATCATCTTCTCAGATCGCCTCAACATACACTTCCGGAGGCTGACTTGGAGGTTCAAGACGGACCCCCAGTTTTCACTCACCGCGACCGCCCCACCTCCACCTCCACCTCCATCCCCGCCGCCTTCTTGGATCTCTTTCAGCGTTTCAATCGAGGTGCCTTCTCTGCTCGCCGCCATATTTTTAAGCGTCTCGATAGGGACCGTGACAGGGAAATCACCACTCCTACACCTGCAATCGATCCGCATAATAATCTCAATCATCTTCATCATCCCCGTCCCACCACCTCCGCCCCTGCTTCCGATCACGATGATCCTCTTCCCGACACCACTCCTCCCGAATGGGCTCTTCTCCTTATTGCCTGCCTTCTCGGCCTTGCTACCGGCCTCTGTGTCGCTGCATTTAACAAGGGGGTGCATGTAATACATGAATGGGCCTGGGCTGGTACTCCAAATGAGGGGGCTGCCTGGCTTCGTTTACAGAGATTGGCAGATACTTGGCATCGAATTCTCTTAATACCGGTCACAGGAGGTGTTATTGTTGGCATGATGCATGGCTTAATTGAAATATTGGGCCAAATAAAACAATCCACTGCTTCCCAAAGCCAAGGCTTTGATTTTCTTCTTGGAGCCTTTCCCACAGTTAAGGCCATACAGGCTGCTGTCACTTTGGGTACTGGTTGTTCGTTAGGTCCTGAAGGTCCTAGTGTAGATATTGGAAAATCGTGTGCAAATGGATTCTATATATTGATGGATAACAACAGCGAAAAAATCAAAATAGCCTTTGTTGCGGCTGGAGCAGCTGCTGGAATTGCTTCAGGCTTTAATGCAGCAGTTGCTGGCTGCTTCTTCGCTATAGAAACTGTTTTAAGACCTCAGCGTGCAGAAAACTCACCTCCTTTCACAACTGCAATGATCATCTTGGCCTCTGTTATATCATCAACTGTCTCAAATGTCTTACTTGGAACACAGTCTGCTTTTACAGTACCAGCATATGATTTGAAATCTGCGGCTGAATTACCTCTGTACCTCATATTGGGCATGCTATGCGGTGTTGTGAGTGTAGCAGTGACTCGCCTATCCACTTGGTTCACTGAGTTTTTTGATTTTGTAAAGGAAAGATTTGGCATCCCTGCTGTTGTCTGTCCTGCCTTGGGTGGTTTAGGAGCTGGAATAATAGCTCTCAAGTATCCTGGAGTATTGTATTGGGGCTTCACTAATGTTGAAGAAATCCTACATACTGGAAAGAGTGCTTCAGCTCCTGGTATTTGGCTATTAACTCAGCTAGTAGGAGCCAAAGTCCTGGCCACAACGCTCTGCAAGGGTTCTGGGCTTGTGGGTGGACTTTACGCTCCAAGTCTGATGATTGGTGCTGCTGTTGGTGCTGTGTTTGGGGGTTCAGCTGCAGAAATCATCAACTCTGCCATTCCAGGAAATGCGGCTGTTGCACAGCCACAGGCATATGCGCTGGTTGGAATGGCTGCTACACTGGCTTCAGTTTGTTCAGTACCCTTGACATCTGTTCTACTTCTGTTTGAGCTGACAAAAGATTACAGAATACTGCTTCCACTCATGGGGGCTGTTGGATTGGCCATATGGGTTCCTTCAGTGACAAAGCAGTCAAAAGAGATTGAAGCATCTGAAACTCGGAGTTCAGTTAGAGGGTATTCTTCTCTTTCACCTTCTGAAGATAAAGATGAAGTTATCTGGAGCCACAATGATGCTGGTATTGACTTGGAGCTCTCAGTTATTGGGAATGCTTTAGACCGTGAAGTAATTAATGAAGATGTTCTTTTGGAAGACCTGAAGGTTTCTCAGGCAATGTCAAGGAACTTCCTGAAGGTTTCGATGGCAATGAACTTGAAGGATGCAATAAAATATATGAATGATAACCAGCAGAACTGTGCACTGGTTCTTGATGATGAAGATTTTCTTGAGGGAATACTAACAAAGGGCGATATTAGACGGTGTCTATCTGAAAAATCCGGCGACACTTTCAATTGTGATGCGAGAGTATTTGATGTTGATACAAGTCTAGTGTCCTCTCTTTGTACACAAGGGATTAGCTATCGTGGTCGGCAACGTGGACTTTTAACCTGTTCCCCCGAAACTGATTTGGCGATGGCAAAGGATCTAATGGAGGCCAAAGGTATCAAGCAACTGCCTGTGGTTAAGCGAGGTGGAGAGTCGCAAAAAGAAAGGAAGCAAAGAGTTGTTGCTATTCTGCATTATGATTCCATTTGGAACTGTATCAGAGAGGTTGTAAATCGACGAAAATCTGTCTACCAGCAGAGGAAAGAGAAAAACACCGAGGAGAAGAGTGCAAACGGTCATTAG 2361 46.25 MSAAEYTDHNHLLRSPQHTLPEADLEVQDGPPVFTHRDRPTSTSTSIPAAFLDLFQRFNRGAFSARRHIFKRLDRDRDREITTPTPAIDPHNNLNHLHHPRPTTSAPASDHDDPLPDTTPPEWALLLIACLLGLATGLCVAAFNKGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLIEILGQIKQSTASQSQGFDFLLGAFPTVKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFYILMDNNSEKIKIAFVAAGAAAGIASGFNAAVAGCFFAIETVLRPQRAENSPPFTTAMIILASVISSTVSNVLLGTQSAFTVPAYDLKSAAELPLYLILGMLCGVVSVAVTRLSTWFTEFFDFVKERFGIPAVVCPALGGLGAGIIALKYPGVLYWGFTNVEEILHTGKSASAPGIWLLTQLVGAKVLATTLCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTKQSKEIEASETRSSVRGYSSLSPSEDKDEVIWSHNDAGIDLELSVIGNALDREVINEDVLLEDLKVSQAMSRNFLKVSMAMNLKDAIKYMNDNQQNCALVLDDEDFLEGILTKGDIRRCLSEKSGDTFNCDARVFDVDTSLVSSLCTQGISYRGRQRGLLTCSPETDLAMAKDLMEAKGIKQLPVVKRGGESQKERKQRVVAILHYDSIWNCIREVVNRRKSVYQQRKEKNTEEKSANGH 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10209468 10214619 + Conep14aG0130800.1 Cone14ag1276 453125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1276 786 Gene3D Clc chloride channel 115 561 - -
Cone14ag1276 786 ProSiteProfiles CBS domain profile. 616 673 IPR000644 -
Cone14ag1276 786 SUPERFAMILY CBS-domain pair 606 755 IPR046342 -
Cone14ag1276 786 Pfam Voltage gated chloride channel 219 542 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone14ag1276 786 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 74 774 IPR050368 GO:0005794(PANTHER)|GO:0009507(PANTHER)
Cone14ag1276 786 SMART cbs_1 704 760 IPR000644 -
Cone14ag1276 786 SMART cbs_1 619 667 IPR000644 -
Cone14ag1276 786 PRINTS Chloride channel signature 276 295 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone14ag1276 786 PRINTS Chloride channel signature 494 510 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone14ag1276 786 PRINTS Chloride channel signature 224 243 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone14ag1276 786 PRINTS Chloride channel signature 453 473 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone14ag1276 786 PRINTS Chloride channel signature 512 531 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone14ag1276 786 Pfam CBS domain 612 667 IPR000644 -
Cone14ag1276 786 Pfam CBS domain 704 735 IPR000644 -
Cone14ag1276 786 MobiDBLite consensus disorder prediction 1 20 - -
Cone14ag1276 786 FunFam Chloride channel protein 113 558 - -
Cone14ag1276 786 CDD Voltage_gated_ClC 136 539 - -
Cone14ag1276 786 Gene3D - 596 761 IPR046342 -
Cone14ag1276 786 CDD CBS_pair_voltage-gated_CLC_euk_bac 616 756 - -
Cone14ag1276 786 MobiDBLite consensus disorder prediction 80 116 - -
Cone14ag1276 786 SUPERFAMILY Clc chloride channel 121 546 IPR014743 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1276 K03281 - - rcu:8285121 1035.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1276 Cone-Chr14:10209468 Cone8ag1351 Cone-Chr8:10839315 4.42E-98 dispersed
Cone12ag1281 Cone-Chr12:9785923 Cone14ag1276 Cone-Chr14:10209468 7.43E-123 wgd
Cone14ag1276 Cone-Chr14:10209468 Cone15ag1302 Cone-Chr15:10173264 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g793 . . . . Bpe09g00096 . Bma10g00617 Bma13g01145 . . . . . . . . . . . . . . . . Cla10g00375 . . . . . . . . Cone14ag1276 Cone15ag1302 . . . . Blo07g00854 Blo10g00891 . Bda12g00991 . Bpe03g00734 . . Sed08g2869 . . . Cma16g00996 . Car16g00953 . . Bhi11g00403 Tan01g1903 Cmetu06g1959 . Hepe06g1241 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004422 1 1 2 4 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 0 1 1 2 1 0 3 1 1 43