Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone14ag1277 ATGACAGGGACCAATGAAAATATGGCTGTTGCTGGAGATTGGTTGCCCCCTGATCCTATCTCAAGAGCATTTTTCACGTCATCCTTAGATGAAGATGTTGGCTTGGAATCATCCACCATGAAAACTGTCAGCCATAGAACTGAGGAACTCTTTCTGGGACCTAAGGAGCAGAAATCAAACTCGCAGGGGGGACTTGTGGAGAGGATAGCAGCTAGAGCTGGATTCAATGCCCCAAGATTAAATACTGAAAGCATTAGATCAGTTGACCTCTCACTCAATTCTGATGTTAGGTCCCCTTACTTGACCATACCACCCGGCCTTAGTCCAACTACACTGCTTGATTCTCCTGCTTTCCTTTCTAATTCACTGCATGCTCAGCCATCTCCAACAACTGGAAAGTTTCCATTTGTAACAAATGGTACCAGTAGGAACTCCATGTTGATGTCAGAGTTGATTGATAAAGGTAGATTTAGTCTACTTGATGATCCCAATACCTCGTCATTTGCTTTCAAGCCTGGAGGGGAATTGGGCTCTCCTTTCCTTTTTGGTGCATTATGCAAAATGGCTCCATCTTTACTTCATCTGCAATCTTTTCCTACGATTGAGGATTCGATACAGTCAGAAAATTCCATTCAGTCTCATAGTGCAGAACCATCCAATGCATCAACTCAAGATAGAAATGGTCTTCATCCATGTGCAGATTTCTCCCAGTCATGCACTGAAAATGAAATTCGGAATAATAATATAGCAGGAGATCAAGGACCTATAGAAAATTCTCCATCACTAGATGAGCAAGCAGATGAAGAAGGAGAGCAGAGAGGCAGTGGAGATTCTATGATTTCTGGCTCTTGTGGGGTCCCATCCAAGGATGGATATAACTGGAGAAAATATGGACAAAAACAAGTAAAAGGTAGTGAGTTTCCACGAAGTTACTACAAGTGCACTCATCCAAACTGTCAGGTCAAGAAGAAGGTAGAACGGTCTATTGAGGGCCTCATAACAGAAATCATCTATAAAGGGACCCATAACCACCCTAAGCCTCCTTCAAGTCGCCGATCGGCCACTGGTTCATCTAACCATCAAGCTGACATGCAACTAGAGATGCTTGAGCAAGGTGTGCCACTAAATGTTGAAGATGGTGATCCAACCTGGGCAAGGGCAAGTGTTCAAAAAGGGAACATTGCTGGAGCCCCTGATTGCACACTTGACAGCATTGAGGTGACATCATTGGTGGCTGTTGGTGGTAATGAATCAAGAGGTGCCGTTGATTACTCCTCCACATTTTCTAACGATAATGATGATGATGATGATGATGATGATGAAGATGGAGTGACCCATGCTAGTGTACCCTTAGGTTATGAAGGTCTGGGGGATGAATCTGAGTCGAAGAGAAGGAAAGTTGAAGCTTATGCTACAGAAATGAGTGGGGCCACAAGAGCGATAAGGGAACCTAGAGTTGTGGTCCAGACGACAAGTGAAGTAGATATACTTGATGATTCATATCGCTGGCGGAAATATGGACAGAAAGTGGTTAAAGGAAACCCAAATCCTAGGAGCTACTACAAGTGCACAAATCCTGGTTGCACAGTGAGGAAGCATGTGGAGAGGGCATCACATGACCTAAAATCAGTAATCACGACATATGAAGGAAAGCATAACCATGACGTTCCTGCCGCTCGTAACAGCAGCCACCTCAACTCTGGCATGTCAGGTTCTGTACCCGCTCAAAGGCCTCATCTCCGGCCATCTGACATGTACCAGATGCACAACGGTATGCCAAGATTCGAAAGGCGTGCTGCTGCATTCGCTCCTGTTGGAAGGCAGCAAATGGGTCCTACTCCTTCACATGACTTCTCTTTTGCAATGGCTCAACCTGGCCTTGCAAATCTGGCAATGGCTCAACCCAGGCTTCCTCCTGGTCTGCCCATTCATCCTTATTTGGTACAGCATCATCACCAGACTAATGAAATGGGTTGTGTGTTACCAAAAGGAGAAGCCAAGTTAGAGCCATCGTCCAATCCTGGTCTGAACCTATCCAATGGTTCATCCATATATCAGAATATAATGAGTAGGCTTCCACTTGGACTTTAG 2091 44.95 MTGTNENMAVAGDWLPPDPISRAFFTSSLDEDVGLESSTMKTVSHRTEELFLGPKEQKSNSQGGLVERIAARAGFNAPRLNTESIRSVDLSLNSDVRSPYLTIPPGLSPTTLLDSPAFLSNSLHAQPSPTTGKFPFVTNGTSRNSMLMSELIDKGRFSLLDDPNTSSFAFKPGGELGSPFLFGALCKMAPSLLHLQSFPTIEDSIQSENSIQSHSAEPSNASTQDRNGLHPCADFSQSCTENEIRNNNIAGDQGPIENSPSLDEQADEEGEQRGSGDSMISGSCGVPSKDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCQVKKKVERSIEGLITEIIYKGTHNHPKPPSSRRSATGSSNHQADMQLEMLEQGVPLNVEDGDPTWARASVQKGNIAGAPDCTLDSIEVTSLVAVGGNESRGAVDYSSTFSNDNDDDDDDDDEDGVTHASVPLGYEGLGDESESKRRKVEAYATEMSGATRAIREPRVVVQTTSEVDILDDSYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHLNSGMSGSVPAQRPHLRPSDMYQMHNGMPRFERRAAAFAPVGRQQMGPTPSHDFSFAMAQPGLANLAMAQPRLPPGLPIHPYLVQHHHQTNEMGCVLPKGEAKLEPSSNPGLNLSNGSSIYQNIMSRLPLGL 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10214634 10218435 - Conep14aG0130900.1 Cone14ag1277 453126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone14ag1277 696 Gene3D WRKY domain 484 550 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1277 696 Gene3D WRKY domain 280 348 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1277 696 SUPERFAMILY WRKY DNA-binding domain 489 557 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1277 696 ProSiteProfiles WRKY domain profile. 492 557 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1277 696 MobiDBLite consensus disorder prediction 429 443 - -
Cone14ag1277 696 SUPERFAMILY WRKY DNA-binding domain 287 347 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1277 696 FunFam WRKY transcription factor 33 484 550 - -
Cone14ag1277 696 MobiDBLite consensus disorder prediction 419 464 - -
Cone14ag1277 696 MobiDBLite consensus disorder prediction 205 260 - -
Cone14ag1277 696 MobiDBLite consensus disorder prediction 205 287 - -
Cone14ag1277 696 FunFam WRKY transcription factor 278 348 - -
Cone14ag1277 696 SMART WRKY_cls 497 556 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1277 696 SMART WRKY_cls 288 346 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1277 696 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 209 576 IPR044810 GO:0003700(InterPro)
Cone14ag1277 696 MobiDBLite consensus disorder prediction 338 359 - -
Cone14ag1277 696 ProSiteProfiles WRKY domain profile. 290 347 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1277 696 Pfam WRKY DNA -binding domain 498 555 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone14ag1277 696 Pfam WRKY DNA -binding domain 289 345 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0603 Cone-Chr10:2835417 Cone14ag1277 Cone-Chr14:10214634 1.78E-109 dispersed
Cone14ag1277 Cone-Chr14:10214634 Cone3ag0629 Cone-Chr3:3107909 3.33E-109 dispersed
Cone15ag1223 Cone-Chr15:9724224 Cone14ag1277 Cone-Chr14:10214634 2.23E-21 dispersed
Cone14ag1277 Cone-Chr14:10214634 Cone15ag1303 Cone-Chr15:10178582 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44806 PF14523 Syntaxin_2 7.50E-27 CL0445 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone14ag1277 K18835 - vvi:100261730 822.002