Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0013 ATGGACTTGGACAGCATCGAATGCGTTTCATCTTCAGATGGTCTGGATGAAGACGAGATCCATGAACACCACACACTTCTTTATCCACAGCCTCATCCTCATACTCATCATCATCATCCTGAGCTTTCATCCTCAAAATCTCGGAGTGGCAGCAACACAACGAGCCCCACTGCAATTGCTCCATCAACCAGTGTACATGAGTTGCTAGAATGCCCCGTTTGCACGAACTCCATGTACCCACCTATCCACCAGTGCCACAACGGGCACACTCTGTGCTCGACATGTAAAACTAGGGTACACAACCGTTGCCCCACTTGTAGGCAAGAGCTAGGAGATATTAGGTGTTTAGCCCTAGAAAAGGTAGCCGAGTCGCTTGAACTTCCCTGCAAGTACTACTCATTGGGGTGCCCTGAGATCTTTCCCTACTATAGCAAAGTTAAGCACGAGTCCCTGTGCAATTTCAGACCATATAACTGCCCTTATGCTGGATCAGAGTGTTTAGTTGTTGGCGATGTTCCATTCTTGGTTGCCCATCTCAGAGATGATCACAAGGTAGACATGCACACCGGATCCACATTCAACCATCGCTATGTCAAGTCCAATCCTCGAGAAGTTGAGAATGCCACTTGGATGCTTACGGTTTTCCATTGTTTCGGGCACTACTTCTGCCTGCATTTTGAAGCCTTCCAGCTGGGCATGGCCTCTGTTTACATGGCATTCCTCCGTTTCATGGGTGATGAAAATGAGGCTCGGAACTATAGCTACAGTCTCGAGGTTGGAGGGAATGGAAGGAAACTGATATGGGAGGGCACCCCACGAAGTGTTAGGGATAGCCATAGAAAGGTGAGGGACAGCCACGACGGCCTCATAATCCAAAGAAACATGGCTCTGTTCTTCTCCGGTGGGGACAGGAAGGAGCTTAAGTTGAGAGTCACAGGGAGGATATGGAAGGAACAACGGAACCCGGAAGCCGGGGTGTGCATACCAAATCATTGTAGCTAA 1002 49.0 MDLDSIECVSSSDGLDEDEIHEHHTLLYPQPHPHTHHHHPELSSSKSRSGSNTTSPTAIAPSTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKVKHESLCNFRPYNCPYAGSECLVVGDVPFLVAHLRDDHKVDMHTGSTFNHRYVKSNPREVENATWMLTVFHCFGHYFCLHFEAFQLGMASVYMAFLRFMGDENEARNYSYSLEVGGNGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQRNPEAGVCIPNHCS 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 114500 116378 + Conep15aG0001400.1 Cone15ag0013 453141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0013 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 179 IPR013083 -
Cone15ag0013 333 Pfam Sina, zinc finger 120 195 - -
Cone15ag0013 333 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 71 106 IPR049548 -
Cone15ag0013 333 CDD Sina 185 313 - -
Cone15ag0013 333 MobiDBLite consensus disorder prediction 27 44 - -
Cone15ag0013 333 Pfam Sina, TRAF-like domain 215 312 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cone15ag0013 333 MobiDBLite consensus disorder prediction 27 59 - -
Cone15ag0013 333 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 180 312 IPR008974 GO:0005515(InterPro)
Cone15ag0013 333 MobiDBLite consensus disorder prediction 45 59 - -
Cone15ag0013 333 FunFam E3 ubiquitin-protein ligase SINAT5-like 180 312 - -
Cone15ag0013 333 SUPERFAMILY TRAF domain-like 124 316 - -
Cone15ag0013 333 ProSiteProfiles Zinc finger SIAH-type profile. 124 184 IPR013010 GO:0008270(InterPro)
Cone15ag0013 333 CDD RING-HC_SIAHs 69 107 - -
Cone15ag0013 333 ProSiteProfiles Zinc finger RING-type profile. 71 107 IPR001841 -
Cone15ag0013 333 FunFam E3 ubiquitin-protein ligase SINAT3 121 179 - -
Cone15ag0013 333 SUPERFAMILY RING/U-box 58 113 - -
Cone15ag0013 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 123 IPR013083 -
Cone15ag0013 333 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 48 314 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0013 Cone-Chr15:114500 Cone5ag0480 Cone-Chr5:2021704 4.59E-171 dispersed
Cone1ag0982 Cone-Chr1:54923415 Cone15ag0013 Cone-Chr15:114500 6.00E-220 wgd
Cone11ag0491 Cone-Chr11:2504830 Cone15ag0013 Cone-Chr15:114500 6.00E-189 wgd
Cone14ag0012 Cone-Chr14:90430 Cone15ag0013 Cone-Chr15:114500 4.29E-230 wgd
Cone15ag0013 Cone-Chr15:114500 Cone18ag1014 Cone-Chr18:7508112 2.01E-192 wgd
Cone15ag0013 Cone-Chr15:114500 Cone5ag0687 Cone-Chr5:2947117 1.79E-221 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0013 K04506 - csv:101215696 612.838