Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0016 ATGCACACCCACCACCTCTCTCTCTCTCTCTCTCTCTCCACCATTTATATACGCATCGATCACTTCCTCCTCTCCCTGCCATCGTTCTCACAATATTTTTTAGACAGGAAGGGAAATAAAATATTAATAATAATGGGCTACGGAAGGCTCAATTCTCTGGACATGGCTGGATGCAGAGGCCTCGACCAGTCAGACAGCGCCGCCTCACTTCCACGACCATCAAACAGCAGAAGGAAGAAACTCATCATCCTTTCTCTGTTCGCTCTCCTTCTAATTGTCACCTCCGCCGTGTCCACCGCTGTCTACATCCGCCACCGCCCATCCGACTCGGGTGGAATGGTTCATGGGCTGCGCCTAAAACCGACCCAGGCAATCTCTCGAACCTGTAGCCGGACCCGCTACCCCTCACTCTGTGTCAATTCGCTCTTAGACTTCCCCGGCTCAGTGAGCGCGGGCGAGCAGGACCTCGTTCACATTACCGTCAACATGACTCTGCATCACTTAACTAGAGCTCTCTACATGTCCTCCAAGATCTCCACTGGCGCTATGCATCCACGTGTACGGTCCGCTTACGAGGACTGCCTCGAGCTCCTGGAGGACTCCGTGGACGCTCTCTCACGCTCCTTGATCTCCGTAGCTTCTTCCTCGGGTGGGACCAGCACCAGTCAGGACGTGCTGACGTGGCTGAGCGCTGCGCTGACGAACCAGGACACGTGCGCGGAGGGATTCGAGGATGTCCGTGGGTCGGTGAAGGATCGGATGGTGGAGCAGCTGCGGGACTCGTCGGAGTTAGTGAGCAACTGCTTGGCCATATTTTCAGGGAGCTACGACTCGGGCGATTTCTCGGGCGTGCCGATTCAGAACAGACGCAGGCGATTGATGAAAGAGAATGGGGAAGCAGATATTCCGGGGAATTTCCCGAAATGGATGAGCAGGAAGGAGAGGAAGTTGCTGAGCTTACCCGTTTCGGCGATACAGGCCGATATTGTTGTGTCCAAGGACGGGAATTGGTCCTGCAAGAAGATTTCGGAGGCTATTAAGATGGCCCCACAGTTCAGTAAACGGAGAACCATTATTTACGTGATGGGAGGAAGGTACGAAGAGGATAATCTGAAGGTGGGAAAGAAAAAGACAAACTTGATGTTCATAGGAGATGGTAAGGGTAAGACTGTCATTTCAGGAGGCAAAAGCGTCTTCGACAATATGACCACATTCCACACCGCCACCTTTGCTGCTACTGGGGCAGGGGTTATCTTAAGAGACATTACGTTTGAGAATTGGGCCGGACCGAGCAAGCACCAAGCCGTGGCTCTTCGCGTCGGAGCTGACCACGCCGTGGTGTACCGTTGCAACATAATTGGCTACCAAGACACTCTTTACGTCCACTCCAACCGCCAATTCTTCCGAGAATGCAACATCTACGGAACCGTAGACTTCATTTTCGGAAATGCAGCCGTGGTTTTCCAAAACTGCAGTCTCTATGCTCGGAAGCCGATGCCCCAACAGAAAAACACCATCACAGCCCAGAACCGTAAAGACCCGTATCAGAACACGGGCATTTCGATCCATGCTTGTCGGATCCTGACCACCCCGGATCTCAATGTGTCAAAGGGCAACTTCTCTACATATTTGGGGCGTCCATGGAAACTGTACTCTAGAACCGTATACATGATGTCGTACATCGATGATCATATACACCCCAGAGGATGGTTGGAGTGGAATACAACATTTGCATTAGATACATTATACTATGGCGAGTACTTGAATTATGGGCCGGGTGGAGCTGTTGGACAAAGGGTGAAATGGCCCGGGTATCGTGTCATAACGTCGCCAATAGAGGCAGGGAAGTTCACGGTTGCTCAGTTTATATACGGCTCATCATGGTTGCCGTCCACCGGAGTCGCGTTCTTGGCCGGCTTGTCACTCTAA 1929 52.1 MHTHHLSLSLSLSTIYIRIDHFLLSLPSFSQYFLDRKGNKILIIMGYGRLNSLDMAGCRGLDQSDSAASLPRPSNSRRKKLIILSLFALLLIVTSAVSTAVYIRHRPSDSGGMVHGLRLKPTQAISRTCSRTRYPSLCVNSLLDFPGSVSAGEQDLVHITVNMTLHHLTRALYMSSKISTGAMHPRVRSAYEDCLELLEDSVDALSRSLISVASSSGGTSTSQDVLTWLSAALTNQDTCAEGFEDVRGSVKDRMVEQLRDSSELVSNCLAIFSGSYDSGDFSGVPIQNRRRRLMKENGEADIPGNFPKWMSRKERKLLSLPVSAIQADIVVSKDGNWSCKKISEAIKMAPQFSKRRTIIYVMGGRYEEDNLKVGKKKTNLMFIGDGKGKTVISGGKSVFDNMTTFHTATFAATGAGVILRDITFENWAGPSKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECNIYGTVDFIFGNAAVVFQNCSLYARKPMPQQKNTITAQNRKDPYQNTGISIHACRILTTPDLNVSKGNFSTYLGRPWKLYSRTVYMMSYIDDHIHPRGWLEWNTTFALDTLYYGEYLNYGPGGAVGQRVKWPGYRVITSPIEAGKFTVAQFIYGSSWLPSTGVAFLAGLSL 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 125619 128352 - Conep15aG0001700.1 Cone15ag0016 453144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0016 642 Gene3D - 322 640 IPR012334 -
Cone15ag0016 642 Gene3D Invertase/pectin methylesterase inhibitor family protein 121 274 IPR035513 -
Cone15ag0016 642 PANTHER PECTINESTERASE 81 631 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone15ag0016 642 FunFam Pectinesterase 121 275 - -
Cone15ag0016 642 CDD PMEI-like_3 129 273 - -
Cone15ag0016 642 FunFam Pectinesterase 322 640 - -
Cone15ag0016 642 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 123 273 IPR035513 -
Cone15ag0016 642 Pfam Pectinesterase 328 625 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone15ag0016 642 NCBIfam pectinesterase inhibitor domain 85 272 IPR006501 GO:0004857(InterPro)
Cone15ag0016 642 SUPERFAMILY Pectin lyase-like 323 639 IPR011050 -
Cone15ag0016 642 SMART PMEI_2 120 271 IPR006501 GO:0004857(InterPro)
Cone15ag0016 642 ProSitePatterns Pectinesterase signature 2. 473 482 IPR033131 -
Cone15ag0016 642 Pfam Plant invertase/pectin methylesterase inhibitor 124 271 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0016 Cone-Chr15:125619 Cone20ag0960 Cone-Chr20:6865051 2.76E-154 dispersed
Cone1ag0980 Cone-Chr1:54911997 Cone15ag0016 Cone-Chr15:125619 6.20E-292 wgd
Cone14ag0014 Cone-Chr14:112197 Cone15ag0016 Cone-Chr15:125619 0 wgd
Cone15ag0016 Cone-Chr15:125619 Cone5ag0685 Cone-Chr5:2933931 6.48E-285 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0016 - - - 0.0