Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0028 ATGGTATATTGCGGTGGCATAAGGAGTTTGATTGCTCAAGCTGGACATATAGGAATATTCTTCAAAAGACGGCTCCAATTCAGGGTTATCTGGAAGAGTTTCCCTGCTGCGCCTCGCTTAGTAAATTCGTGTATGAGTGATTTCAGAACTGGTTTAAGAATGATGGTAGATATGGGTGATACTACAAAGCGCGGTCCAGTTGCTGGTATGTTGCCCGAGAAAGATGAAGATGGTGGATATTTTAGTGGAGGGTGGAAAAGTGAGGACGAGAAACTAAGCTGTGGATATTCAAGTTTCAGAGGAAAGAGAGCTACGATGGAGGATTTCTATGATTTTAAAACATCCAAGATTGATGGTCAAACAGTCTGCCTGTTTGGCATATTTGATGGTCATGGTGGATCTCGCACTGCTGAGTATTTGAAGGAGCATCTCTTTGAGAATCTCATGAAGCATCCCCAATTTATATCAGACACCAAATCGGCTATCAGTGAAACATATAGGAAGACGGATGCTGATTTTTTGGATGCTGAAAAAGATACTTACCGGGAAGATGGTTCTACTGCCTCAACAGCAGTGATTGTTGGTAACCATCTTTACGTTGCCAATGTTGGAGATTCGCGCACTGTAATTTCAAAGGCTGGAAAAGCAATTCCTCTTTCTGATGATCATAAACCTAATAGAACCGATGAGAAACAGAGAATTGAGAGTGCAGGAGGTGTTGTCATGTGGACAGGCACTTGGAGGGTAGGAGGCATCTTGGCTATGTCTCGTGCTTTCGGTAACCGAATGTTGAAGCAATTTGTTGTTGCAGATCCTGAAATCCAGGATCAAGAAATTGATGAAGATTTGGAGGTGCTAGTGCTTGCAAGTGATGGGCTGTGGGATGTGGTTTCCAATGAGGATGCGGTGTTGCTGGCTCAAACAGAAGAGGAACCCGAAGGAGCAGCTCGGAGGCTAACAGAAGCCGCTTTCACACAAGGTAGTGCTGACAACATAACATGCGTTGTTGTTAGGTTCCACCATGACAAACCCGAAGATCCATCTGCATCCGAGAACGATTCAAACTTTCATCTTTAA 1077 43.83 MVYCGGIRSLIAQAGHIGIFFKRRLQFRVIWKSFPAAPRLVNSCMSDFRTGLRMMVDMGDTTKRGPVAGMLPEKDEDGGYFSGGWKSEDEKLSCGYSSFRGKRATMEDFYDFKTSKIDGQTVCLFGIFDGHGGSRTAEYLKEHLFENLMKHPQFISDTKSAISETYRKTDADFLDAEKDTYREDGSTASTAVIVGNHLYVANVGDSRTVISKAGKAIPLSDDHKPNRTDEKQRIESAGGVVMWTGTWRVGGILAMSRAFGNRMLKQFVVADPEIQDQEIDEDLEVLVLASDGLWDVVSNEDAVLLAQTEEEPEGAARRLTEAAFTQGSADNITCVVVRFHHDKPEDPSASENDSNFHL 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 207232 209395 + Conep15aG0002900.1 Cone15ag0028 453156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0028 358 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169(InterPro)
Cone15ag0028 358 Pfam Protein phosphatase 2C 94 332 IPR001932 -
Cone15ag0028 358 SMART PP2C_4 83 337 IPR001932 -
Cone15ag0028 358 ProSiteProfiles PPM-type phosphatase domain profile. 93 339 IPR001932 -
Cone15ag0028 358 Gene3D - 84 346 IPR036457 -
Cone15ag0028 358 SUPERFAMILY PP2C-like 90 340 IPR036457 -
Cone15ag0028 358 CDD PP2Cc 93 339 IPR001932 -
Cone15ag0028 358 PANTHER PROTEIN PHOSPHATASE 86 338 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone15ag0028 358 FunFam Probable protein phosphatase 2C 76 85 345 - -
Cone15ag0028 358 SMART PP2C_SIG_2 75 339 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0028 Cone-Chr15:207232 Cone4ag1725 Cone-Chr4:12767565 1.18E-117 dispersed
Cone1ag0964 Cone-Chr1:54855567 Cone15ag0028 Cone-Chr15:207232 1.92E-182 wgd
Cone14ag0026 Cone-Chr14:216001 Cone15ag0028 Cone-Chr15:207232 1.20E-131 wgd
Cone15ag0028 Cone-Chr15:207232 Cone5ag0671 Cone-Chr5:2870663 2.35E-183 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0028 K17506 - csv:101203681 508.064