Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0032 ATGGGAGTTGTGACCGTTTCTAGCTCAGCTGCTCGTACTCCGGTTGGATTGAAGGCAAGACTTTCGACTCATCGATCGGTAGTGAACAGACCTTTGAATTCGATTCTAGCATTCAAAGCAGATAAACCCAATAACACCACTTTGGTTTCACTTCAAGAGCAAATCCCTTTACCCATCGAACCAAACAAAGGCCAAAAGAGGTTAGGGAAGGCTAAAAAGCCTTTGAAAATAGTGAAAGCTGCTTGCATAGATGAAGCTTCTCCTTCTACCTTGGACGTTGATTACAATGAAGCTGCCGTGAAGCTCGAAAACTTGTACAAGCTCAGTCCTACAACCAACACTTCTGAAGTCGAGGAAATGGATGGTATTGTAACAAGGAGAGGGCAAAGAAGGGGGAAGAAGGTGGGCGGAATTAACGATAAAAATGTGTTCGGAAATCTGATGAAGAAGGTGAAAAGGTTGAATCTTGATAAGAGGATTGCGATTAAATGTGAAAAGGAACAGAGAGCAGTTGCTTTGATGTTGAAGAAGAAAGACCGAGAAAATGAAAATGACAAAATTGATCGGCTTGTGAGGGATTATTCTGCTTCAACTGATTTGGTTAGCTTGGACTGGAAGAAAATGAAGATCCCTCCTGTGCTTCCTTCATCAGAGCACGTTTGGTTATTCAAGTTAATGCAACCAATGAAGGCACTTGTTCAAGTGAAAGATGACTTACAGAAAGAGTTGGGAAGAGAACCGACTGAGCTTGAATTAGCAAAGGCTACAAATTTGAATGTAGCTGGAGTAAGGAGGCACCTTGAGGTTGGTCGAGCTGCAAGAAGTAAGCTCATCAAGCACAATCTTCGACTTATACTGTTTGTAATCAACAAGTACTTTGAGGATTTTGCAAACGGGCCAAAGTTTCAAGACCTTTGTCAGGCAGGAGTGAAGGGCCTTATTACAGCAGTAGATCGGTTTGAGCCGAAGAGGAGCCTCCGGCTCTCAACATATGCTCTCTTCTGGATCAGACATTCCATTATCCGTTCATTGACTCTCTCAAGCTTCACCCGTGTTTCCTTTGGCCTTGAATCGGTAAGAGTGGAGATTCAAAAGGCAAAACTCGAGTTATTATTTGAGCTTCAGAGATTACCAACAGAAGAAGAGATAGTTGAAAGAATCGGGATATCGCCGGAGAGATACCATGAAGTAATGAGGGCTGCAAAACCGGTATTGTCTCTCCATTCAAGGCATAAAACCACGCAAGAAGAATTTATCAATGGGATCACAGACGTAGATGGTGTAAACGGTGATAATAGGAGGCAGGCTGCTCTTTTAAGACTTGCTCTTGATGATGTGCTTGATTCTTTAAAGCCTAAGGAGAGCTTGGTGATCAGACAGAGATATGGGCTTGATGGGAAAGGAGATAGAACATTGGGGGAGATTGCTGGCAACTTAAACATATCGAGAGAAATGGTTCGGAAACATGAAGTGAAGGCTCTAATGAAGCTCAAGCATCCAGCTCGAGTAGATTATCTACGCCGATATGTGATGATGGCATCTGTATCGAGTCAGTCGCAGTTCCGATACGCCCAACCGCCATCCAAGGTTCTCCATTTGAGAAACTTGCCATGGGAGTGCACAGAGGAAGAGCTCATTGAACTTGGGAAGCCATTTGGTAAAGTTGTCAACACAAAGTGTAATGTTGGAGCAAACCGCAATCAGGCCTTTATTGAGTTTGCCGATTTAAATCAGGCTATCGCAATGATTTCATATTATGCTTCATCCTCTGAGCCTGCTCAAGTAAGAGGAAAAACTGTATACCTACAGTATTCCAATAGGCAAGAAATAGTTAACAACAAAACTGCTGCTGATGTTGCTGGAAATGTACTTCTAGTAACCATTGAGGGTGCAGATGCTCGTCTTGTCAGCATTGATGTTTTACACTTGGTCTTTTCAGCTTTTGGGTTTGTGCACAAAATCACGACGTTTGAAAAAACAGCTGGATTTCAGGCATTGGTGCAATTTTCGGATGCAGAGACTGCCACTTCTGCAAAGGATGCCCTGGATGGCAGAAGCATCCCTAGGTACCTGCTTTCTGATCATATTGGACCGTGCTCCCTTAAAATCACTTATTCTGCACACACAGATCTAACCGTGAAATTCCAGAGCCATCGGAGCAGGGACTACACTAATCCTTATCTTCCTGTTGCTCCATCAGCAATAGATGGAAACAGTCAGTTCAGCATGGGTATGGATGGGAAAAAACTTGAACCTGAGAGCAATGTTCTTCTTGCCTCTATTGAGAACATGCAATATGTTGTCACTTTGGAGGCTTTGCACATGGTTTTTTCTGCTTTTGGGCCTGTGCAAAAGATTGCCATGTTTGATAAGAACGGAGGACTTCAGGCATTGATCCAGTATCCTGATGTTCATACTGCCATTGTTGCTAAGGAAGCATTGGAGGGGCACTGCATTTATGATGGGGGGTTTTGCAAGCTTCACATCTCTTATTCACGCCACACTGATCTCAGCATAAAGGTGAACAATGATCGGAGCAGAGACTATACGATCCCCTTAACTCCTATGGTAACTTCCCAACCCATGATCCCAGGCCAACAGCCTGCTCATATGATGGATCCTTCTGCTCAACAATACAGTAGAAACCAGTTCGGGCCAGCTCCAGATCAGCAGCCTGGAATGCCTCAGTCTTCCGTAGGATGGGCCCCCAGTGGCCCAACAGGGCTGTACTCCATGCCTATGCAGAATTATCCGTTCATGCCACCGGAGATGGGCCCAGGTATGATGCTGAGCCAGAATCGCCCACCACGGACATCATCATCTATGCCTCCTTATCACATGCAATGA 2847 44.4 MGVVTVSSSAARTPVGLKARLSTHRSVVNRPLNSILAFKADKPNNTTLVSLQEQIPLPIEPNKGQKRLGKAKKPLKIVKAACIDEASPSTLDVDYNEAAVKLENLYKLSPTTNTSEVEEMDGIVTRRGQRRGKKVGGINDKNVFGNLMKKVKRLNLDKRIAIKCEKEQRAVALMLKKKDRENENDKIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHVWLFKLMQPMKALVQVKDDLQKELGREPTELELAKATNLNVAGVRRHLEVGRAARSKLIKHNLRLILFVINKYFEDFANGPKFQDLCQAGVKGLITAVDRFEPKRSLRLSTYALFWIRHSIIRSLTLSSFTRVSFGLESVRVEIQKAKLELLFELQRLPTEEEIVERIGISPERYHEVMRAAKPVLSLHSRHKTTQEEFINGITDVDGVNGDNRRQAALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRRYVMMASVSSQSQFRYAQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTAADVAGNVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLSDHIGPCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDGNSQFSMGMDGKKLEPESNVLLASIENMQYVVTLEALHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVHTAIVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTIPLTPMVTSQPMIPGQQPAHMMDPSAQQYSRNQFGPAPDQQPGMPQSSVGWAPSGPTGLYSMPMQNYPFMPPEMGPGMMLSQNRPPRTSSSMPPYHMQ 948
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 223284 230003 - Conep15aG0003300.1 Cone15ag0032 453160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0032 948 FunFam Polypyrimidine tract-binding protein-like 2 622 732 - -
Cone15ag0032 948 Pfam RNA recognition motif 533 584 IPR000504 GO:0003723(InterPro)
Cone15ag0032 948 Gene3D - 268 345 - -
Cone15ag0032 948 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 195 344 IPR013325 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone15ag0032 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 619 687 - -
Cone15ag0032 948 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 436 511 IPR013324 -
Cone15ag0032 948 FunFam Polypyrimidine tract-binding protein-like 2 753 858 - -
Cone15ag0032 948 CDD RRM2_PTBPH1_PTBPH2 621 715 IPR034793 -
Cone15ag0032 948 Pfam Sigma-70 region 2 277 344 IPR007627 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone15ag0032 948 SMART rrm1_1 758 828 IPR000504 GO:0003723(InterPro)
Cone15ag0032 948 SMART rrm1_1 530 603 IPR000504 GO:0003723(InterPro)
Cone15ag0032 948 Gene3D - 350 402 IPR036388 -
Cone15ag0032 948 Gene3D - 224 267 IPR036388 -
Cone15ag0032 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 529 607 IPR000504 GO:0003723(InterPro)
Cone15ag0032 948 Pfam Sigma-70, region 4 446 499 IPR007630 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone15ag0032 948 Gene3D - 433 515 IPR036388 -
Cone15ag0032 948 Gene3D - 516 622 IPR012677 -
Cone15ag0032 948 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 356 415 IPR013324 -
Cone15ag0032 948 MobiDBLite consensus disorder prediction 932 948 - -
Cone15ag0032 948 CDD Sigma70_r4 440 498 - -
Cone15ag0032 948 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 513 822 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0043484(PANTHER)
Cone15ag0032 948 SUPERFAMILY RNA-binding domain, RBD 636 729 IPR035979 GO:0003676(InterPro)
Cone15ag0032 948 MobiDBLite consensus disorder prediction 926 948 - -
Cone15ag0032 948 SUPERFAMILY RNA-binding domain, RBD 760 852 IPR035979 GO:0003676(InterPro)
Cone15ag0032 948 CDD RRM1_PTBPH1_PTBPH2 527 607 IPR034792 -
Cone15ag0032 948 Gene3D - 623 732 IPR012677 -
Cone15ag0032 948 Gene3D - 753 858 IPR012677 -
Cone15ag0032 948 CDD RRM3_PTBPH1_PTBPH2 754 850 IPR034794 -
Cone15ag0032 948 MobiDBLite consensus disorder prediction 867 899 - -
Cone15ag0032 948 PRINTS Major sigma-70 factor signature 450 462 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone15ag0032 948 PRINTS Major sigma-70 factor signature 304 317 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone15ag0032 948 PRINTS Major sigma-70 factor signature 471 486 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone15ag0032 948 PRINTS Major sigma-70 factor signature 486 497 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone15ag0032 948 PRINTS Major sigma-70 factor signature 328 336 IPR000943 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone15ag0032 948 SUPERFAMILY RNA-binding domain, RBD 517 611 IPR035979 GO:0003676(InterPro)
Cone15ag0032 948 FunFam Polypyrimidine tract-binding protein homolog 2 516 621 - -
Cone15ag0032 948 Pfam Sigma-70 region 3 232 275 IPR007624 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone15ag0032 948 Pfam Sigma-70 region 3 361 427 IPR007624 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone15ag0032 948 NCBIfam sigma-70 family RNA polymerase sigma factor 273 499 IPR014284 GO:0003700(InterPro)|GO:0006352(InterPro)|GO:0006355(InterPro)
Cone15ag0032 948 Pfam RRM-like domain 754 832 IPR021790 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0032 K03093 - - vvi:100250120 715.687
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0032 Cone-Chr15:223284 Cone7ag0504 Cone-Chr7:2323624 1.49E-186 dispersed
Cone1ag0959 Cone-Chr1:54826100 Cone15ag0032 Cone-Chr15:223284 3.10E-230 wgd
Cone14ag0030 Cone-Chr14:231793 Cone15ag0032 Cone-Chr15:223284 0 wgd
Cone15ag0032 Cone-Chr15:223284 Cone5ag0649 Cone-Chr5:2770116 2.71E-238 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g868 Blo06g01076 . . . . . . . Cmo16g00073 Cmo18g01330 . . . . Sed07g0818 . Cpe14g00055 Bhi01g01453 Tan01g0146 Cmetu06g0694 . Hepe07g0087 . . . . . . . . . . . Cone14ag0030 Cone15ag0032 . . . . . . . Bda15g00776 . Bpe12g00373 . . . . . Cma16g00070 Cma18g01301 Car16g00061 Car18g01217 Cpe09g00041 . . . . . . . . Cla05g00949 Cam05g1040 Cec05g1045 Cco05g1039 Clacu05g1031 Cmu05g0981 Cre05g1060 . Csa03g02199 Chy06g01254 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005753 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38