Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0049 ATGGAGCAGAAGCACTTTTTGCTGTCTGCTTTAGGGGTAGGGGTTGGAGTTGGTGTTGGGCTTGGGCTGAGTTCAGGGCAAGGTGTTGGTAAATATTGGGTTAAAGGCCAAGAATTTGGTGGTGAAATTTCAGGGGAGGTGATTGAGAAGGAGCTCATTAAGCTTCTTTTCGATGGCAAAGAAAATAGAGTTACATTTGATGAGTTTCCTTATTACCTAAGTGAAAGGACGCAGGTGTTATTGACGAGTGCTGCTTATGTTCATTTAAGACACCATGATATTTCCAAGCACACCCGTAATCTTTCACCCGCAAGTAGAGCTATTTTGCTCTCCGGACCTTCCGAAATCTGCCAACAAATGCTTGCCAAGGCTTTAGCACATCATTTTGATTCAAAGTTGCTGCTGCTTGATGTTTCGGACTTTTCTCTGAAGATGCAGAGCAAATATGGTTGTTCCAAAAAGGAACCATCGTTCAAAAGGTCCATCTCCGAGGTGACATTGGACCGGATGTCAAGTTTTCTCGGTTCTTTTTCCATACTTCCTTCAAGTGAGAATAATAAAGGTACCTTACGCCGACAAGGAAGTTCCATGGATATCAAATCAAGAAGCACGGAAGGTTCAAGTAATGCTCCAAAACTCCATCGAAATATCTCAGCTGCATCCGACCTAAGTAGTATCTCATCCAAATATTCCCCCACACATCAAGCTCCCCTTAACCACACAAGCAGCTGGTGTTTTGATGAGAAACTTTTTCTACAGTCCCTCTACAAGGTCCTATTGTTAAAATCCGAAACGGGGTCCGTTATTTTGTACTTGAGGGACGTGGAGAAACTTCTTTCCCAGTCACAAAGATTATACAATCTGTTCAGTAAATTTCTGAACAAGCTCTCAGGTTCAGTGTTAGTACTCGGTTCTCAACTAGTTGACCCAGAAGATGATTGCAAAGACGTGGACAAAAAACTGGCCGATCTGTTCCCTTACAATATTGAGATCACCCAGCCCAATGATGAGGCCAATCTAGTCAGCTGGAAAGCCCAACTAGAAGAGGACATGAAGGTGATTCAATTCGAAGATAGCAAAAATCACATTGCTCAAGTACTTGCTGCAAATGATTTAGAATGTGATGATCTAGGTTCGATTTGCCTTGGGGACACTACGGTTCTTAGTAATTACATTGAAGAAATTGTCGTATCTGCAATTTCCTATCAATTGATCAATAACAAGCAACCTGAATACAGAAATGGAAAGCTTCTTATATCTTCCAAGAGTTTGTCGTATGGATTGAGCATATTCCAGGAAGGAAATTTTGAAGGAAAAGACAGTCTCAAGTTGGAAGGAAATTCAGAGTCTTCTCTGGAAACTGTTGCAAACAAAAATGCGGCAGAAAAATCCGTTCCTACAACGAAGAAGGAAGGCGAGAATGGACCTACACAAAAAGCACCTGAAGTTCCTCCGGACAATGAGTTTGAGAAACGCATAAGGCCAGAGGTAATCCCTGCAAATGAGATAGGAGTGACATTTTCAGACATAGGTGCCATGGAAGAAACCAAAGAATCGCTTCAAGAACTTGTGATGCTTCCTCTTAGAAGACCTGACCTCTTCAAAGGCGGGCTCCTTAAGCCCTGTAGGGGCATATTGCTTTTTGGGCCACCTGGCACTGGAAAGACAATGTTGGCTAAGGCCATTGCAAATGAAGCCGGAGCAAGTTTCATTAACGTTTCAATGTCTACCATCACTTCCAAATGGTTTGGAGAAGATGAGAAGAATGTACGTGCTCTTTTCACTCTTGCTGCTAAGGTCTCTCCTACCATTATTTTTGTGGATGAGGTTGATAGCATGCTGGGGCAACGCACTAGGGTTGGAGAGCATGAGGCTATGAGAAAGATAAAGAATGAGTTTATGAGTCATTGGGATGGGCTTTTGACTAAAACTGGAGAGAGGATTCTAGTTCTTGCTGCAACTAATAGGCCGTTTGATCTTGATGAGGCGATCATTAGGCGGTTTGAGAGAAGAATTATGGTTGGTCTTCCTTCAGTGGAGAGCAGGGAAATGATCTTGAAAACTCTTTTGGGGAAAGAGAAGGTTGAGATTTTGGATTTCAAGGAGCTTGCAACTATGACAGAAGGATATAGTGGAAGTGATCTGAAGAATTTGTGCACAACGGCTGCTTATCAACCTGTTCGAGAGCTGTTACAACAGGAGACATTAAAGGATAAGGAAAAGAAACAGAAAGAGAAAAAAGGCAAAAAATTGGAGGGTAGTTCGGAAGATGGTTCAGAAACAAATGAGATAGAAGATAAAGAGGACCAAGTAATCAATTTAAGGCCTTTGAATATGGAAGATATGAGGCAAGCAAAAAATCAGGTGGCTGCAAGTTTTGCTGCAGAGGGATCAGTAATGAGTGAGCTGAAGCAATGGAACGATTTGTACGGCGAGGGAGGTTCAAGGAAAAAGCAACAGCTAACCTACTTCCTTTAG 2478 42.29 MEQKHFLLSALGVGVGVGVGLGLSSGQGVGKYWVKGQEFGGEISGEVIEKELIKLLFDGKENRVTFDEFPYYLSERTQVLLTSAAYVHLRHHDISKHTRNLSPASRAILLSGPSEICQQMLAKALAHHFDSKLLLLDVSDFSLKMQSKYGCSKKEPSFKRSISEVTLDRMSSFLGSFSILPSSENNKGTLRRQGSSMDIKSRSTEGSSNAPKLHRNISAASDLSSISSKYSPTHQAPLNHTSSWCFDEKLFLQSLYKVLLLKSETGSVILYLRDVEKLLSQSQRLYNLFSKFLNKLSGSVLVLGSQLVDPEDDCKDVDKKLADLFPYNIEITQPNDEANLVSWKAQLEEDMKVIQFEDSKNHIAQVLAANDLECDDLGSICLGDTTVLSNYIEEIVVSAISYQLINNKQPEYRNGKLLISSKSLSYGLSIFQEGNFEGKDSLKLEGNSESSLETVANKNAAEKSVPTTKKEGENGPTQKAPEVPPDNEFEKRIRPEVIPANEIGVTFSDIGAMEETKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTKTGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMILKTLLGKEKVEILDFKELATMTEGYSGSDLKNLCTTAAYQPVRELLQQETLKDKEKKQKEKKGKKLEGSSEDGSETNEIEDKEDQVINLRPLNMEDMRQAKNQVAASFAAEGSVMSELKQWNDLYGEGGSRKKQQLTYFL 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 307190 311876 + Conep15aG0005100.1 Cone15ag0049 453177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0049 825 SMART AAA_5 541 678 IPR003593 GO:0016887(InterPro)
Cone15ag0049 825 MobiDBLite consensus disorder prediction 447 487 - -
Cone15ag0049 825 MobiDBLite consensus disorder prediction 184 212 - -
Cone15ag0049 825 MobiDBLite consensus disorder prediction 736 771 - -
Cone15ag0049 825 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 42 824 IPR051701 GO:0005741(PANTHER)
Cone15ag0049 825 MobiDBLite consensus disorder prediction 447 463 - -
Cone15ag0049 825 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 504 679 - -
Cone15ag0049 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 767 IPR027417 -
Cone15ag0049 825 Pfam AAA+ lid domain 699 740 IPR041569 -
Cone15ag0049 825 ProSitePatterns AAA-protein family signature. 648 667 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone15ag0049 825 MobiDBLite consensus disorder prediction 736 757 - -
Cone15ag0049 825 Pfam ATPase family associated with various cellular activities (AAA) 545 675 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone15ag0049 825 Gene3D - 505 794 IPR027417 -
Cone15ag0049 825 Gene3D - 678 792 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0049 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0049 Cone-Chr15:307190 Cone16ag0024 Cone-Chr16:161078 4.07E-167 dispersed
Cone14ag0044 Cone-Chr14:290164 Cone15ag0049 Cone-Chr15:307190 0 wgd
Cone15ag0049 Cone-Chr15:307190 Cone5ag0903 Cone-Chr5:3871261 0 wgd
Cone15ag0049 Cone-Chr15:307190 Cone5ag0648 Cone-Chr5:2764432 1.81E-31 wgd
Cone15ag0049 Cone-Chr15:307190 Cone6ag0820 Cone-Chr6:4175897 0 wgd
Cone15ag0049 Cone-Chr15:307190 Cone9ag0819 Cone-Chr9:3950168 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g810 . Blo15g00108 . . . . . . . . . Cma15g01059 . Car15g00982 . Cpe05g00632 . . . . . . . . Cla01g00082 Cam01g0082 Cec01g0083 Cco01g0083 Clacu01g0082 Cmu01g0084 Cre09g2425 . . . Cone15ag0049 . Csa05g00095 Chy09g01399 . . . . . . . . . . . Cmo15g01117 . . . . . Cpe13g00283 Bhi12g00764 . . . . . Lcy12g0068 . . . . . . . Lsi09g00068 . . Cme09g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75