Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0055 ATGGCAGATGACTGGGATCTCGCTGCCGTGGTGCGGAGCTGCAAGACAGACGCTTCATCAGCTGCCGCCTCCGCCGCAGCAGCTGACACAGGCAGGAGTACAGGATTACCATCAGACGCTCTATCTTGCTTGGCTTCATTGACTTTCGAAGAGGAAAAAGACCAATTTTCTTTTCCCAATATCATACATCAAAACGATGATCAGTACTACTCGTCTAGAACAGGTTATACCAATCATGGCTTTCAGGAGTTACAGCAACTAATCAAGCCCATAATTTTCTGCAAAAATGATACAATCGGAGGAGGAGCATCATCGGTACCATCATCAAGTAGTTTGAACCATATCAATATCGGCCAACAACACCACCACCACCATTTACGTCATGTAAATATTATTAGGCCGACGCCCCCGCCACCGAATAATAACTTCAATCTTAGACCGGCCTCCGATTTTGGAGGATTCATCCAAGGCATGCAAAAACGGGAACTAGATCAATCTTTGCAAGAGCAGCAGCCTAATCATCCAGTACCTTCTAATATTCCTGCTTTTCTTAACTCCCAACCTCAGGCCACTAGAATTAGAAAAAGAAAGAGCCAACAGAAGAGAACTGTGTGCCATGTTACGGCGGAGAATCTCTCAAACGACGTGTGGGCGTGGCGGAAATACGGGCAAAAGCCCATCAAGGGTTCTCCGTATCCAAGGAATTATTACCGATGCAGCAGCTCGAAGGGATGTCCGGCGAGAAAACAAGTGGAGCGAAGCAACACTGATCCGAACATCTTTGTGATAACGTACTCTGGGGACCACACTCACCCTCGTCCCACTCACCGGAACTCTCTCGCCGGAAGTACCCGACACAAGTATTCATCCCAACCCGAAAAAGAATTACCAGCTCCAAGCAAATTATCACCAGATCCTGATCACATAATGCCCACCAATAGCAGTAGCCTTTCTCCAACAACTCCATTAAGAGTACTGAAGGAGGAGTTAGCTGATCGCCCTCATCAAGCAACTCATCTCAAGGAGACGATTACTACTACCTCCATTGATGCAGGGGATCAAGACATGGACATTAATATTGATGACGATCCTAACCAGGTTCTGGATCAGGAGTTGATTATGGCAGATAGCGATGATCAAGAGGATGGATCAATGATGGAGATGAGTGCTAGCACTGATCATGATGACATTTTCCTAGGTCTTCAAGAGCTTGATTCGAGCCCCATTTAA 1230 46.5 MADDWDLAAVVRSCKTDASSAAASAAAADTGRSTGLPSDALSCLASLTFEEEKDQFSFPNIIHQNDDQYYSSRTGYTNHGFQELQQLIKPIIFCKNDTIGGGASSVPSSSSLNHINIGQQHHHHHLRHVNIIRPTPPPPNNNFNLRPASDFGGFIQGMQKRELDQSLQEQQPNHPVPSNIPAFLNSQPQATRIRKRKSQQKRTVCHVTAENLSNDVWAWRKYGQKPIKGSPYPRNYYRCSSSKGCPARKQVERSNTDPNIFVITYSGDHTHPRPTHRNSLAGSTRHKYSSQPEKELPAPSKLSPDPDHIMPTNSSSLSPTTPLRVLKEELADRPHQATHLKETITTTSIDAGDQDMDINIDDDPNQVLDQELIMADSDDQEDGSMMEMSASTDHDDIFLGLQELDSSPI 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 335860 337409 - Conep15aG0005700.1 Cone15ag0055 453183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0055 409 Gene3D WRKY domain 196 266 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0055 409 ProSiteProfiles WRKY domain profile. 208 274 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0055 409 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 405 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone15ag0055 409 SMART WRKY_cls 213 273 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0055 409 MobiDBLite consensus disorder prediction 264 320 - -
Cone15ag0055 409 FunFam WRKY transcription factor 22 196 267 - -
Cone15ag0055 409 Pfam WRKY DNA -binding domain 214 272 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0055 409 SUPERFAMILY WRKY DNA-binding domain 207 274 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0387 Cone-Chr14:1810039 Cone15ag0055 Cone-Chr15:335860 4.00E-45 dispersed
Cone15ag0055 Cone-Chr15:335860 Cone15ag0424 Cone-Chr15:2001244 1.47E-41 dispersed
Cone11ag0447 Cone-Chr11:2253478 Cone15ag0055 Cone-Chr15:335860 9.25E-45 wgd
Cone14ag0050 Cone-Chr14:312009 Cone15ag0055 Cone-Chr15:335860 1.22E-196 wgd
Cone15ag0055 Cone-Chr15:335860 Cone18ag1061 Cone-Chr18:7777622 3.35E-47 wgd
Cone15ag0055 Cone-Chr15:335860 Cone6ag0812 Cone-Chr6:4127490 1.32E-40 wgd
Cone15ag0055 Cone-Chr15:335860 Cone9ag0811 Cone-Chr9:3902804 4.95E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44810 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0055 - - - 0.0