Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0061 ATGAAGAAAGTAGTTTTGAAAGTACAACTCTATGATGATAAAGCGAAGCAGAAGGCGATGAGCAAGGTCTCAGGCTTAGCAGGAGTGGAATCAATCGTCATGGACATGAAGGAGAAGAAATTGACAGTGACTGGGGACATAGATCCAGTATGTATAGTGAGCAAACTGAGGAAGATCTGTCTAGCAGAGATAGTATCAGTGGGACCCGCCAAGGAAGAGAAAAAGAAAGATGAGCCCAAGAAGGAGGAGGGTAGTAAGAAAGTAGAGGAGGAAAAGAAGAAAACAGAGGGTGGGAAGAAAGACGATGTGGCTGAGCTTGTGAAGGCTTATCAAGCCCAGTATCCTCACTTGACCACACACTACTATGTCAGAAGTGCTGAAGATGATCCAAACGCTTGTGTTATTTCTTAA 411 43.8 MKKVVLKVQLYDDKAKQKAMSKVSGLAGVESIVMDMKEKKLTVTGDIDPVCIVSKLRKICLAEIVSVGPAKEEKKKDEPKKEEGSKKVEEEKKKTEGGKKDDVAELVKAYQAQYPHLTTHYYVRSAEDDPNACVIS 136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 352631 353517 - Conep15aG0006300.1 Cone15ag0061 453189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0061 136 SUPERFAMILY HMA, heavy metal-associated domain 1 59 IPR036163 GO:0046872(InterPro)
Cone15ag0061 136 Pfam Heavy-metal-associated domain 7 58 IPR006121 GO:0046872(InterPro)
Cone15ag0061 136 ProSiteProfiles Heavy-metal-associated domain profile. 1 68 IPR006121 GO:0046872(InterPro)
Cone15ag0061 136 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 1 135 IPR051863 -
Cone15ag0061 136 Gene3D - 1 73 - -
Cone15ag0061 136 MobiDBLite consensus disorder prediction 69 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0061 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0061 Cone-Chr15:352631 Cone15ag0421 Cone-Chr15:1979942 5.76E-20 dispersed
Cone1ag1193 Cone-Chr1:55862218 Cone15ag0061 Cone-Chr15:352631 7.35E-27 wgd
Cone11ag0445 Cone-Chr11:2233811 Cone15ag0061 Cone-Chr15:352631 4.16E-27 wgd
Cone14ag0054 Cone-Chr14:326876 Cone15ag0061 Cone-Chr15:352631 4.69E-61 wgd
Cone15ag0061 Cone-Chr15:352631 Cone18ag1063 Cone-Chr18:7800113 7.07E-15 wgd
Cone15ag0061 Cone-Chr15:352631 Cone5ag0894 Cone-Chr5:3842233 1.28E-27 wgd
Cone15ag0061 Cone-Chr15:352631 Cone6ag0809 Cone-Chr6:4105694 5.54E-28 wgd
Cone15ag0061 Cone-Chr15:352631 Cone9ag0806 Cone-Chr9:3871585 2.00E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g770 . . Bda05g00094 . Bpe03g00155 . Bma10g01254 Bma14g02042 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0061 . Csa05g00243 . . Blo07g00373 Blo09g00061 . . . . . . . . . . . . . . . Bhi12g00777 . . . . . Lcy12g0059 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000207 7 7 3 10 7 4 5 6 5 3 4 5 6 7 6 6 5 9 5 5 7 5 5 4 6 4 5 12 6 6 175