Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0076 ATGTGGTTGTTTAGCAGAAGAGGCCCATCTGGGTTTTCAGCTTCATCCACTGCTGAAGAAGTTACAGAAGGGATTGATGGAACTGGTCTCACAGCCATTGTCACAGGGGCATCAAGTGGCATTGGCGTGGAAACTGCTCGGGTTCTTGCATTGCGTGGAGTTCATGTCGTTATGGGTGTAAGAAATATTACAGCCGGAAAAGAGGTCCGAAAAGCAATAGTCGACGAAATACCAACTGCAAAAATTGATACCATGGAGTTGGATTTAAGCTCAATGGCATCAGTAAGGAAGTTTGCTCAAGATTACAATTTTTCGAATCTTCCATTGAACATCCTCGTTAACAACGCAGGAATCATGGCAACTCCATTCATGCTTTCCAAAGACAACATAGAGCTACAGTTTGCAACAAACCATCTGGGTCATTTTCTTTTAACAAGCCTGTTATTAGAGACCATGAAAAGGACAGCATTTGAAAGCAAAAAGGAAGGAAGGATTGTCAATGTCTCATCAAGGCGGCATCGGTTCTCTTACCGTGAGGGTATCCGGTTTGAAAAAGTCAATGATCAATCAAGTTATAACAGCCTATCTGCATATGGTCAGTCAAAGCTTGCTAATGTTTTGCATGCCATTGAACTTTCAAGACTGCTAAAGGAAGAAGGGGTGAGAATATCTGCAAATTCAGTACATCCCGGTGCCATTGCAACTAATCTTTTCCGTCATAACCGCCTTTTCAGTGGTCTTGCTAGCCTTGTTGGTAAATATGTACTAAAGAATGTTCAGCAGGGAGCCGCAACTACATGCTATGTGGCACTGTGTCCGGAAATCAGAGGGATTAGCGGCCGATATTTTGCCAATAATAACATAGCTGAAGAAAGTTCCCAAGCTAATGATTCCGAGTTATCACGAAAACTCTGGGATTTCAGTTTGGATCTGATTAATAGATACAGTTCTGGAAGTATTTGA 963 42.16 MWLFSRRGPSGFSASSTAEEVTEGIDGTGLTAIVTGASSGIGVETARVLALRGVHVVMGVRNITAGKEVRKAIVDEIPTAKIDTMELDLSSMASVRKFAQDYNFSNLPLNILVNNAGIMATPFMLSKDNIELQFATNHLGHFLLTSLLLETMKRTAFESKKEGRIVNVSSRRHRFSYREGIRFEKVNDQSSYNSLSAYGQSKLANVLHAIELSRLLKEEGVRISANSVHPGAIATNLFRHNRLFSGLASLVGKYVLKNVQQGAATTCYVALCPEIRGISGRYFANNNIAEESSQANDSELSRKLWDFSLDLINRYSSGSI 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 418365 420150 - Conep15aG0007800.1 Cone15ag0076 453204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0076 320 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Cone15ag0076 320 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Cone15ag0076 320 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Cone15ag0076 320 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Cone15ag0076 320 PANTHER RETINOL DEHYDROGENASE 9 313 - -
Cone15ag0076 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 286 IPR036291 -
Cone15ag0076 320 Pfam short chain dehydrogenase 31 172 IPR002347 -
Cone15ag0076 320 CDD retinol-DH_like_SDR_c_like 29 305 - -
Cone15ag0076 320 Gene3D - 23 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0076 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0076 Cone-Chr15:418365 Cone16ag0084 Cone-Chr16:445819 8.35E-81 dispersed
Cone1ag1173 Cone-Chr1:55779073 Cone15ag0076 Cone-Chr15:418365 1.25E-162 wgd
Cone14ag0073 Cone-Chr14:394425 Cone15ag0076 Cone-Chr15:418365 1.19E-148 wgd
Cone15ag0076 Cone-Chr15:418365 Cone5ag0880 Cone-Chr5:3771236 2.30E-132 wgd
Cone15ag0076 Cone-Chr15:418365 Cone6ag0786 Cone-Chr6:4002640 4.26E-17 wgd
Cone15ag0076 Cone-Chr15:418365 Cone9ag0789 Cone-Chr9:3786302 1.50E-152 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1173 Cone5ag0880 Cone14ag0073 Cone15ag0076 . . Chy09g01373 . . . . . . . . Bma12g01115 . . . . . . . . . Bhi12g00030 . . Lac11g0045 . . Lcy12g0042 . . . . . . . Lsi09g00093 . . Cme09g01920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126