Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0090 ATGGCGCAGATGGTAGAGATGAGAGTTCCAAATCTTGACTGTGAGGGATGTGCTTCCAAGTTAAGGAAAACTCTCTTCAAGCTTAAAGGAGTTGAAGAGGTGGAAGTAGAAATGGAGATGCAGAAGATAACAGTGAGGGGGTACGGGTTAGAGGAGAAGAAGGTTCTAAAGGCAATCAAGCGAGCGGGAAAATCAGCAGAAGCATGGCCATTTCCAGGATTTTCTCACTACGCTTCGTTTTATAAGTACCCAACTTACATTGTTAACCACTACTACGATACTCTTAACAGCAATGCTGCTTCTACCGGTGTTCACACTTTCTTTCAAACTCCGGCGGTTTATTCCGTAGCCGTTGCTTCCGACGAGGCTATCGCATCGCTTTTCAGCGACGACAATCCTCATGCTTGCTCAATCATGTGA 420 45.48 MAQMVEMRVPNLDCEGCASKLRKTLFKLKGVEEVEVEMEMQKITVRGYGLEEKKVLKAIKRAGKSAEAWPFPGFSHYASFYKYPTYIVNHYYDTLNSNAASTGVHTFFQTPAVYSVAVASDEAIASLFSDDNPHACSIM 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 467618 468329 + Conep15aG0009200.1 Cone15ag0090 453218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0090 139 SUPERFAMILY HMA, heavy metal-associated domain 3 69 IPR036163 GO:0046872(InterPro)
Cone15ag0090 139 CDD HMA 6 67 IPR006121 GO:0046872(InterPro)
Cone15ag0090 139 Gene3D - 1 68 - -
Cone15ag0090 139 ProSiteProfiles Heavy-metal-associated domain profile. 3 67 IPR006121 GO:0046872(InterPro)
Cone15ag0090 139 Pfam Heavy-metal-associated domain 7 64 IPR006121 GO:0046872(InterPro)
Cone15ag0090 139 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 3 139 IPR045181 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0090 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0090 Cone-Chr15:467618 Cone8ag0788 Cone-Chr8:7920085 2.78E-21 dispersed
Cone14ag0086 Cone-Chr14:434834 Cone15ag0090 Cone-Chr15:467618 1.17E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g668 Blo06g01124 . . . . Bpe07g00939 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0090 . . . . . . Bda06g00682 Bda15g00728 . Bpe12g00434 . Bma12g01122 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008162 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 35