Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0108 ATGGATGATTTTGTGGAGAATTTTGATTCAAGTAAAGGGGTGATGTTGAGGGATGATATTGAGTATGATAGCAGATCGGGCAGTGATAATAATTTTGATCCCCCATTTGATGACGGCCAGGATCTGGCAAATGTACAGCCATCCAGGAAAAAGAAGTACCATAGACATACTCCTCTTCAAATTCAAGAACTGGAAAATTTCTTCAGGCTGTGTCCTCATCCTGATGAAAAACAAAGAACTGACCTCGGAAAGAGGTTAAGCTTGGAGCCTAAGCAAGTCAAGTTTTGGTTTCAGAATCGACGAACTCAGATGAAGACCCAATTGGAACGGCATGAGAACTTAATTCTACGACAAGAAAATGATAAGCTCCGGGCTGAAAATAGCATGATGAAGGAATCCATAACAAACCCATTATGTAACACTTGTGGTGGGCCCACCATGTTTGGTCAGGTCCCATTTGAGGAGAACCGGCTTAGGCTCGAGAATGCTAAACTAAGGGAAGAAATAAACCGGATGTGTGCCTTGTCTAGTATGTTTCTTGGCGGGTCACTTTCTTCATCCTTGGCTAATCCCAACTCCTTTCCTCCAAACTCCATCTCTAGTTTAGAACTTGGGCTTTCCGGCTTGAATGGATTCAACAATAATGCGAATGCTTTAGTACTAACTGAACTTAATTTGGGTGATGGAATATATTCGAGTTCTTCACTTGTTAAGCCAGAAATAGGCCGAATGGGGAATGAATTTCCATTGGAGAAAACGTGGTTTGTGGATCTTGCAATCTTTGCCATGGATGAATTAGTTAAAATGGCACAATCTGATGGTCCTTTATGGATCAAAAGTTTAAACGGAAGGAAAGAGACATTGAACCGCAAAGAATACAATAAAACATTTCGTTCGTGTATCAGAAGTAAACCAAATAATTGGGTGAGTGAAGCAACAAGAGATGCTAATATGGTTATTATTAATAGCTTGGCTCTTGTTGAGACCTTGATGGATGCGAATCGGTGGGCAGAAATGTTTCCTTGCTTGATAGCTAGAGCCTCCACCATTGATATCATATCGGGCAGCATGGATGGGACCTGCAATGGGACCATACAACTGATGTATGCCGAGCTGCAAGTGCTCTCACCGTTGGTTTCTGTCCGTCCGATCAAGTTCCTCCGATTCTGCAAGCAGCATGCAGAGGGTGTGTGGGTCGTGGTTGATGTTTCGATTGATCTCAATTCAAACCCGTACCTCAATTGTCGGAAGCTTCCTTCTGGCTGCATCGTGCAAGATATGCCTAATGGTTACTCCAAGGTTACTTGGATTGAACATATTGAATATGACGAATGCCTAATCCACCCACTCTACCAGAATGTAATCAGTTCTGGCTTGGGCTTTGGTGCAAACCGTTGGCTCACTACTCTCCAAAGACAGTGTGAATGCGTGTCTATTCTGATGTCTTCTTCCAACAACCCAAGTGAAGATCCATCAGGAATGACAATGAGTGGTCGGAGAAGCATGTTAAAGCTTGCACGGCGCATGGTCGATAACTTCTGTTCTGGAATTTGTGCTTCAACTGCTCGAAAATGGGACAAGTTAGTTGTTGACAATGTGAGCCAAGATGTCAAGATGATGGCTAGGAAGAGTCTAAACGACCCCGGGGAACCACCTGGGATCGTTCTAAGTGCTGCTACTTCAGTTTGGATGCCCGTTTCGCCCCAGAGACTGTTCGGTTTCTTGCAGGATGGAAGATTGAGGAGCGAGTGGGATGTTCTGTCCAATGGTGGGACCATTCAAGAGGTGGTCCACATAGCTAAGGGACATGATACGGCAACCAACTGTGTTTCTCTCCTTCGCAGCAATCCTCATGGGAACACAACATCTACAATGCTGATTTTGCAGGAGACTTGGGTGGACCCACATGCAGGATCCTTAGTTGTTTATGCTCCAGTCGATACACAGTCGGTCAATATGGTGATGAATGGCGGAGACTCTGGTTATGTGCCCTTGCTGCCATCCGGGTTCGCGATTCTTCCGCAGGTGGGACCTGAGCTGGACAAGGTCGGGAATCGGATGGAAAGCAGTGGATGTTTGCTCACAGTTGGGTTCCAAATTTTGGTTAACGGCCTTCCAACTGCTAAGATTACCGTTGAATCAATCGAGACGGTTAACAACCTCATTTCTTGCACCATTGACAAGATCAAAGCTGCTCTTAATTAA 2205 44.72 MDDFVENFDSSKGVMLRDDIEYDSRSGSDNNFDPPFDDGQDLANVQPSRKKKYHRHTPLQIQELENFFRLCPHPDEKQRTDLGKRLSLEPKQVKFWFQNRRTQMKTQLERHENLILRQENDKLRAENSMMKESITNPLCNTCGGPTMFGQVPFEENRLRLENAKLREEINRMCALSSMFLGGSLSSSLANPNSFPPNSISSLELGLSGLNGFNNNANALVLTELNLGDGIYSSSSLVKPEIGRMGNEFPLEKTWFVDLAIFAMDELVKMAQSDGPLWIKSLNGRKETLNRKEYNKTFRSCIRSKPNNWVSEATRDANMVIINSLALVETLMDANRWAEMFPCLIARASTIDIISGSMDGTCNGTIQLMYAELQVLSPLVSVRPIKFLRFCKQHAEGVWVVVDVSIDLNSNPYLNCRKLPSGCIVQDMPNGYSKVTWIEHIEYDECLIHPLYQNVISSGLGFGANRWLTTLQRQCECVSILMSSSNNPSEDPSGMTMSGRRSMLKLARRMVDNFCSGICASTARKWDKLVVDNVSQDVKMMARKSLNDPGEPPGIVLSAATSVWMPVSPQRLFGFLQDGRLRSEWDVLSNGGTIQEVVHIAKGHDTATNCVSLLRSNPHGNTTSTMLILQETWVDPHAGSLVVYAPVDTQSVNMVMNGGDSGYVPLLPSGFAILPQVGPELDKVGNRMESSGCLLTVGFQILVNGLPTAKITVESIETVNNLISCTIDKIKAALN 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 520933 523585 - Conep15aG0011000.1 Cone15ag0108 453236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0108 734 SUPERFAMILY Bet v1-like 498 722 - -
Cone15ag0108 734 ProSiteProfiles START domain profile. 248 479 IPR002913 GO:0008289(InterPro)
Cone15ag0108 734 Coils Coil 101 128 - -
Cone15ag0108 734 MobiDBLite consensus disorder prediction 22 55 - -
Cone15ag0108 734 SUPERFAMILY Bet v1-like 249 476 - -
Cone15ag0108 734 CDD homeodomain 50 107 IPR001356 GO:0003677(InterPro)
Cone15ag0108 734 CDD START_ArGLABRA2_like 255 475 - -
Cone15ag0108 734 SMART HOX_1 49 111 IPR001356 GO:0003677(InterPro)
Cone15ag0108 734 SUPERFAMILY Homeodomain-like 33 107 IPR009057 -
Cone15ag0108 734 FunFam Homeobox-leucine zipper protein HDG1 37 123 - -
Cone15ag0108 734 ProSiteProfiles 'Homeobox' domain profile. 47 107 IPR001356 GO:0003677(InterPro)
Cone15ag0108 734 SMART START_1 257 476 IPR002913 GO:0008289(InterPro)
Cone15ag0108 734 Pfam Homeodomain 50 105 IPR001356 GO:0003677(InterPro)
Cone15ag0108 734 Gene3D - 39 122 - -
Cone15ag0108 734 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 29 734 IPR042160 -
Cone15ag0108 734 Pfam START domain 262 476 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0331 Cone-Chr14:1544963 Cone15ag0108 Cone-Chr15:520933 2.39E-194 dispersed
Cone15ag0108 Cone-Chr15:520933 Cone8ag1442 Cone-Chr8:11179665 7.76E-221 dispersed
Cone11ag0406 Cone-Chr11:2008083 Cone15ag0108 Cone-Chr15:520933 8.28E-294 wgd
Cone14ag0104 Cone-Chr14:484646 Cone15ag0108 Cone-Chr15:520933 0 wgd
Cone15ag0108 Cone-Chr15:520933 Cone15ag0360 Cone-Chr15:1665508 2.16E-215 wgd
Cone15ag0108 Cone-Chr15:520933 Cone18ag1103 Cone-Chr18:8049457 2.72E-291 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44813 PF01466 Skp1 3.70E-11 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0108 K09338 - gmx:100794400 889.412