Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0118 ATGGATCTTTCTGCAGAGTTGTCAAGTAGTCGTACTTGTGAAAGTAACAGCAATTATCAATATGGGATGAATTTGTCGGATGATGAGATTTTGTTAGCTTCTAGAAACCCGAAAAAGAGAGCGGGAAGGAAGAAGTTCAAGGAGACACGCCACCCTGTGTACAGAGGAGTGAGGAGGAGGAATTCCGGTAAGTGGGTTTGTGAAGTTAGAGAACCCAATAAGAAGACCAGGATTTGGCTCGGGACATTCCCGACTGCTGATATGGCGGCCCGGGCCCACGACGTGGCGGCGATAGCATTGAGGGGTCAGTCAGCTTGTTTGAATTTTGCTGACTCGTTGTGGCGGCTACCAGTGCCGGAATCTATAGAAGCAAAGGATATTCAGAAAGCGGCGGTGAAGGCTGCAGAGGAGTTCCGCCCTCTAGAATCAGAAGGGGTGGCCGGAGATGTTCCGGGGAGTGATTTTCCAGTTGCAGGGGCAGGGGAAGAAGTGTTTTATATGGATGAGGAGGCGGTTTTCGGACTGCCCGGGTTGCTGGTGAATATGGCGGAAGGGATGCTTTTGCCTCCACCTCAGTGTGTAGTAGAAGGGTACGGCGATGATGACGTGGAATTTAATGCTGATATCTCATTGTGGAGTCATTCAATTTGA 651 49.77 MDLSAELSSSRTCESNSNYQYGMNLSDDEILLASRNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFPTADMAARAHDVAAIALRGQSACLNFADSLWRLPVPESIEAKDIQKAAVKAAEEFRPLESEGVAGDVPGSDFPVAGAGEEVFYMDEEAVFGLPGLLVNMAEGMLLPPPQCVVEGYGDDDVEFNADISLWSHSI 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 569337 570062 + Conep15aG0012000.1 Cone15ag0118 453246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0118 216 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Cone15ag0118 216 Pfam AP2 domain 52 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag0118 216 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag0118 216 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag0118 216 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag0118 216 CDD AP2 54 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag0118 216 SMART rav1_2 53 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag0118 216 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 9 213 IPR045277 GO:0003700(InterPro)
Cone15ag0118 216 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677(InterPro)
Cone15ag0118 216 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0118 Cone-Chr15:569337 Cone5ag0848 Cone-Chr5:3637109 9.56E-93 dispersed
Cone1ag1140 Cone-Chr1:55645962 Cone15ag0118 Cone-Chr15:569337 5.72E-34 wgd
Cone14ag0113 Cone-Chr14:525640 Cone15ag0118 Cone-Chr15:569337 3.07E-124 wgd
Cone15ag0118 Cone-Chr15:569337 Cone5ag0847 Cone-Chr5:3631525 7.60E-39 wgd
Cone15ag0118 Cone-Chr15:569337 Cone6ag0745 Cone-Chr6:3780101 5.88E-76 wgd
Cone15ag0118 Cone-Chr15:569337 Cone9ag0749 Cone-Chr9:3572793 1.15E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44814 PF00091 Tubulin 2.60E-69 CL0566 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0118 - - - 0.0