Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0131 ATGGTGAGAGGGAAGATCGAGATGAAGCGAATCGAAAATGAAACGAGCAGGCAAGTAACTTTCTCCAAGCGTAGAAGTGGACTACTGAAGAAGGCCTTCGAGCTGTCTGTCCTCTGTGATGCTGAAGTTGCTGTCATCATTTTTTCCCAGAAAGGGAGGCTTTATCAGTTTTCAAGCTCTGAGATGCAAAAGACGATCGAAAGATACCGTAAGTATGGAAAAGATGTGCAGACCAGTAGGTTGGACATGGAACAGTATGTGCAGCAATTGAAGCTTCAGAGTATAACCCTAGCAAAGAAGATTGAGCTCCTTCAAATTTCTCAAAGGAAGTTTTTGGGACATGACTTGTGTTCGTCTTCCGTTGAGGAACTCCAAGAAATTAGCAGCCAATTGGAGCAAAGTTTATGTAGCATTCGAGCTAGAAAGGCTCAGTTATTCATGGAACAACTGGATCAACTAAAAGCAAAGGAGAGATTGCTTTTGGACGAGAATGCAAAATTAACCGCTAAGGTTAAGCCATCGACGGCTGTGCAACCAACTCTAGAGGCACGGTCAGCCGAGAAGACTAATAATGACAGCCAAAGTAGAGAGTATGTTACAAATTTGGATCATGTAGAGACTGACTTGGTCATTGGTTTGCGCTGGTCCTAG 651 43.47 MVRGKIEMKRIENETSRQVTFSKRRSGLLKKAFELSVLCDAEVAVIIFSQKGRLYQFSSSEMQKTIERYRKYGKDVQTSRLDMEQYVQQLKLQSITLAKKIELLQISQRKFLGHDLCSSSVEELQEISSQLEQSLCSIRARKAQLFMEQLDQLKAKERLLLDENAKLTAKVKPSTAVQPTLEARSAEKTNNDSQSREYVTNLDHVETDLVIGLRWS 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 606443 609962 + Conep15aG0013300.1 Cone15ag0131 453259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0131 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone15ag0131 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone15ag0131 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone15ag0131 216 Pfam K-box region 87 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone15ag0131 216 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Cone15ag0131 216 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone15ag0131 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone15ag0131 216 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone15ag0131 216 Coils Coil 150 170 - -
Cone15ag0131 216 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone15ag0131 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone15ag0131 216 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone15ag0131 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone15ag0131 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone15ag0131 216 Gene3D - 13 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0131 Cone-Chr15:606443 Cone16ag0224 Cone-Chr16:1634376 1.13E-38 dispersed
Cone14ag0123 Cone-Chr14:568720 Cone15ag0131 Cone-Chr15:606443 7.72E-114 wgd
Cone15ag0131 Cone-Chr15:606443 Cone15ag0346 Cone-Chr15:1607150 3.09E-61 wgd
Cone15ag0131 Cone-Chr15:606443 Cone18ag1119 Cone-Chr18:8126848 7.86E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44816 PF03763 Remorin_C 1.60E-30 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0131 - - - 0.0