Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0143 ATGAGACTTTCTGGTCTCTTGGTTAGAGAGGATGCAGTCGGTAACATATTTGGTAGATGGGAAGGGTCGGAACCGGAGCTTTCAGCAGTTGCAACTGGTTCCCATATCGATGCCATCCCGTTCTCTGGAAAATATGATGGAGTGGTTGGTGTATTAGGTGCTTTAGAAGCCATTAATGTACTGAAAAGATCGGGATTCAAACCTAAGAGATCACTAGAAGTTATCTCTTTCACCTCAGAAGAGCCTACCCGTTTTGGGATCAGCTGTTTAGGAAGCCGGTTATTGTCTGGGAGTGAGGCACTTGCTCAAGTTTTGAAGACAACAGTTGACGGAAATAATATCTCCTTTATTGATGCTGCAAAATCGGCTGGCTATGCATCTAACCATGAAGATATATCCAGTGTTTTTCTAAAGAAAGGAAGTTACTCGGCTTTTGTTGAGCTTCACATAGAACAGGGGCCCATATTGGAGAATGAAGGTGTACCTATTGGCATAGTAACTGCTATTGCTGCCCCAGCAAGTATAAAGGTCGATTTTGAAGGCAATGGAGGCCATGCTGGTGCTGTGCTAATGCCACAGAGAAATGATGCTGGACTTGCAGCTGCCGAGCTGGCACTTGCCGTTGAGCAGCATGTATTAGAATCTGGATCTATAGACACAGTTGGCACAGTTGGTATTCTTGAGCTACATCCCGGTGCAGTTAACAGTATCCCGAGCAAATCCCATGTTGAGATAGATATCAGAGATATTGATGAAAATCGAAGAGACATTGTGATTGAGAATATCCATCAGTCAGCAATTAAGATAGCAGGGGCCCGTGGGGTCAAGCTATCAGAATTCAAAATAGTGAATCAGGACCCACCTGCACCTTCTGAAAAATCTGTAATAGAAGCAATGGAAGCTGCATCAATCGTGCTCAAACTTCCATTTAAATCCATGATAAGTAGAGCATACCATGATTCTCTGTTTATGTCCAGGGTATCTCCAATGGGCATGATATTCATTCCATGTTTCAAAGGATATAGCCATAAGCCTGAAGAATATGCTTCGATTGAGGACATTGCAAATGGAGTGAAGGTATTAGCACTTACTCTTGCCAGGTTGTCCCTCCATTGA 1116 43.37 MRLSGLLVREDAVGNIFGRWEGSEPELSAVATGSHIDAIPFSGKYDGVVGVLGALEAINVLKRSGFKPKRSLEVISFTSEEPTRFGISCLGSRLLSGSEALAQVLKTTVDGNNISFIDAAKSAGYASNHEDISSVFLKKGSYSAFVELHIEQGPILENEGVPIGIVTAIAAPASIKVDFEGNGGHAGAVLMPQRNDAGLAAAELALAVEQHVLESGSIDTVGTVGILELHPGAVNSIPSKSHVEIDIRDIDENRRDIVIENIHQSAIKIAGARGVKLSEFKIVNQDPPAPSEKSVIEAMEAASIVLKLPFKSMISRAYHDSLFMSRVSPMGMIFIPCFKGYSHKPEEYASIEDIANGVKVLALTLARLSLH 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 674818 677526 - Conep15aG0014600.1 Cone15ag0143 453271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0143 371 Gene3D Zn peptidases 1 361 - -
Cone15ag0143 371 PANTHER ALLANTOATE DEIMINASE-RELATED 1 369 IPR010158 GO:0016813(InterPro)
Cone15ag0143 371 SUPERFAMILY Bacterial exopeptidase dimerisation domain 174 287 IPR036264 -
Cone15ag0143 371 NCBIfam hydantoinase/carbamoylase family amidase 1 366 IPR010158 GO:0016813(InterPro)
Cone15ag0143 371 SUPERFAMILY Zn-dependent exopeptidases 5 368 - -
Cone15ag0143 371 PIRSF Amidase_hyd_carb 1 371 IPR010158 GO:0016813(InterPro)
Cone15ag0143 371 FunFam Putative ureidoglycolate hydrolase 171 287 - -
Cone15ag0143 371 Pfam Peptidase family M20/M25/M40 32 366 IPR002933 GO:0016787(InterPro)
Cone15ag0143 371 Gene3D - 171 287 - -
Cone15ag0143 371 CDD M20_bAS 1 366 - -
Cone15ag0143 371 Pfam Peptidase dimerisation domain 173 265 IPR011650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0143 K18151 - - mdm:103414713 587.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0143 Cone-Chr15:674818 Cone1ag0357 Cone-Chr1:2957431 2.57E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g622 . . . . . Bpe14g01231 . . . . . . Car06g01157 . . Cpe08g00313 . . . . . . . . . . . . . . . . Cone15ag0143 . . Lsi05g01678 . . Cme06g00537 Blo02g00611 . . Bda13g00085 . . Bma02g00804 . . Cmo06g01351 . . . . . . . . . . . . . . Cla05g00480 Cam05g0522 Cec05g0535 Cco05g0536 Clacu05g0522 Cmu05g0494 Cre05g0560 . Csa03g01255 Chy06g00509 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011290 1 0 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 31