Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0149 ATGGTAAATCTGAACGAATTGGAGCAGGAAATTATGAAGGTTCAGTTTAATCAGAATGAGGAAATCCAGAAAGTGTATAAGCAGAGATTGGTATGGCAGAAGCAAGATGTGATTCATCTCAAGGAAATCTCACTCTGGAATCTGACCTATGATAAGATTGTCGAGCTTTTAGCAAGAACTGTCTGTACTGTTTATGCTAGAATTTCCCTGGCAGTTGGAAACTCTGCTCCGAAAGATGAAGACGATGATCATATTGATCAATCCAGTCATGTTTCTGGTCATTCTACCGCAGGAAAGCCGACTAATTCCGGTTCACCTTCCACTGTAGGAGGATGTGCCTTAGCCTTACATTATGCAAATATCATCATTGTCATAGAGAAGTTGCTTTGGGATCCTCAACTAGTTGGAGTGGAGGCTAGAGATGAGTTGTACCAAATGTTGCCTACAAGCTTGAGAATATCTCTCAAGTCTAATTTGAAGTCTTATATGCAGAATTTGGCTATATATGATGCACTGCTTGCCCGTGAATGGAATGATAAGCTCAATGGGATATTGAGATGGCTCGGCCCTATGGCTTATAACACAATCCGGTGGCAATACGAATGTAGTTTCGAGCAACATCAGGTTGTTTCACGAACCAATGTTGTTCTGCTTCAGACTCTTCATTTTGCTGATAAAGAGAGGACAGAGGCTGCAATATGTCAACTCCTTGTCGGGTTGACTTATATTTTCCGTCTGGCTAATCCTTGGTGGGCAGGGCAGGTGGGGCTGCCGGCCGGTCTCAATCTGGCAACCAATCATTCACCCGTCTTAAAACAGCCCAACCGCTACGACCTATCCATAACCGCAAGTAGCGGTGCAAGAAGTACTGGAAGTACTAGAGATGACGATGAAGATGGAGATAATGGATCGGACGAGCCAAAAGAAGGAGCTGTTGAGGTCGGAACCCGCCGGCCCAGAGGCCGGCCCCCTGGATCCAAAAACAGGCCCAAGCCCCCCATTTTCGTAACCCGAGACAGTCCGAACGCGCTTCGGAGCCATGTCATGGAGATTTCTGGAGGTGCTGACGTGGCAGATAGCGTGGCTCAGTTCGCTCGGAGGCGTCAGAGAGGAGTTTGTATTCTAAGTGGGAGCGGCTCGGTTGCTAATGTAACCCTAAGACAGCCTGCTGCGCCTGGAGCTGTAGTTGCACTCCGTGGAAGGTTTGAAATTCTCTCCTTGACCGGAGCATTCTTGCCAGGACCGGCCCCTCCTGGCTCGACTGGGCTAACTGTTTATCTAGCTGGAGCTCAGGGGGAGGTTGTGGGTGGGAGTGTTGTCGGATCGTTAGTTGCAGCTGGGCCAGTGATGATAATTGCTGCAACTTTTGCTAATGCTACATATGAGAGGTTGCCTCTTGAAGATGATGATCATGATCAGGCCGGGGCAGGGGGCAGTCCCGGGCATGGCGATGCTGGCAGCTCTCCGCCTGCAATTGGGCCAGCACATAGCGGGCTGATGCAGCATGGGCTTCCGGCTGATCCTGCCACGGCGGCTGTGGCTTACAACCTGCCTCCAAATTTGCTTCCTAATGGAGGAAACTTAGGGCATGATCCATATACTTGGGCTCATGGTCGTCCACCTTACTGA 1629 49.36 MVNLNELEQEIMKVQFNQNEEIQKVYKQRLVWQKQDVIHLKEISLWNLTYDKIVELLARTVCTVYARISLAVGNSAPKDEDDDHIDQSSHVSGHSTAGKPTNSGSPSTVGGCALALHYANIIIVIEKLLWDPQLVGVEARDELYQMLPTSLRISLKSNLKSYMQNLAIYDALLAREWNDKLNGILRWLGPMAYNTIRWQYECSFEQHQVVSRTNVVLLQTLHFADKERTEAAICQLLVGLTYIFRLANPWWAGQVGLPAGLNLATNHSPVLKQPNRYDLSITASSGARSTGSTRDDDEDGDNGSDEPKEGAVEVGTRRPRGRPPGSKNRPKPPIFVTRDSPNALRSHVMEISGGADVADSVAQFARRRQRGVCILSGSGSVANVTLRQPAAPGAVVALRGRFEILSLTGAFLPGPAPPGSTGLTVYLAGAQGEVVGGSVVGSLVAAGPVMIIAATFANATYERLPLEDDDHDQAGAGGSPGHGDAGSSPPAIGPAHSGLMQHGLPADPATAAVAYNLPPNLLPNGGNLGHDPYTWAHGRPPY 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 720428 723830 - Conep15aG0015300.1 Cone15ag0149 453277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0149 542 Pfam Plants and Prokaryotes Conserved (PCC) domain 345 457 IPR005175 -
Cone15ag0149 542 Pfam Protein of unknown function (DUF668) 108 197 IPR007700 GO:0045927(InterPro)
Cone15ag0149 542 SUPERFAMILY AF0104/ALDC/Ptd012-like 342 470 - -
Cone15ag0149 542 ProSiteProfiles PPC domain profile profile. 341 477 IPR005175 -
Cone15ag0149 542 CDD DUF296 345 431 IPR005175 -
Cone15ag0149 542 FunFam AT-hook motif nuclear-localized protein 344 471 - -
Cone15ag0149 542 Gene3D - 344 473 - -
Cone15ag0149 542 MobiDBLite consensus disorder prediction 281 341 - -
Cone15ag0149 542 Coils Coil 4 24 - -
Cone15ag0149 542 MobiDBLite consensus disorder prediction 75 105 - -
Cone15ag0149 542 MobiDBLite consensus disorder prediction 90 105 - -
Cone15ag0149 542 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 295 542 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone15ag0149 542 MobiDBLite consensus disorder prediction 468 503 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0149 Cone-Chr15:720428 Cone3ag0681 Cone-Chr3:3469813 1.61E-116 dispersed
Cone7ag0906 Cone-Chr7:7121216 Cone15ag0149 Cone-Chr15:720428 1.23E-14 dispersed
Cone1ag1106 Cone-Chr1:55494713 Cone15ag0149 Cone-Chr15:720428 3.09E-51 wgd
Cone14ag0141 Cone-Chr14:683830 Cone15ag0149 Cone-Chr15:720428 1.54E-187 wgd
Cone15ag0149 Cone-Chr15:720428 Cone15ag0333 Cone-Chr15:1527904 1.34E-17 wgd
Cone15ag0149 Cone-Chr15:720428 Cone18ag1132 Cone-Chr18:8173667 1.07E-75 wgd
Cone15ag0149 Cone-Chr15:720428 Cone4ag0307 Cone-Chr4:1405303 1.96E-80 wgd
Cone15ag0149 Cone-Chr15:720428 Cone5ag0814 Cone-Chr5:3498489 1.04E-49 wgd
Cone15ag0149 Cone-Chr15:720428 Cone6ag0720 Cone-Chr6:3625087 2.71E-21 wgd
Cone15ag0149 Cone-Chr15:720428 Cone7ag0306 Cone-Chr7:1330720 4.86E-29 wgd
Cone15ag0149 Cone-Chr15:720428 Cone8ag0353 Cone-Chr8:2019529 2.91E-76 wgd
Cone15ag0149 Cone-Chr15:720428 Cone9ag0724 Cone-Chr9:3455326 4.95E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0149 - - - 0.0