Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0155 ATGGATTTCCCCATCATAGCCATTGCCATTATAGGGATATTTGCCACAGCCTTCTTGCTACTAAGCTACTACCTCTTCGTCATCAAATGCTGCCTAAACTGGCACCGAGCCGATCTCTTCCATCGATTTTCCCTCTCGAGACGACGGTCCGAGCCATTCATTCTGCCTCACTACCCAGCCCTGCCACAATCTCGCGGCCTTGACGAATTGGTGATCAGATCAATCCCAATATTTAAATACAAGAAATCGTCATCGTCCTCATCATTTTCATCTAATGAATGTGAGTGTGCGGTTTGCCTAAACGAATTTCAAGAAGATGACAAGCTAAGAGTTATACCAAACTGCAGCCATGTCTTCCACATCGATTGCATTGATGTTTGGCTTCAAACCAATGCTAATTGTCCACTTTGTAGAACAAGCATTTCTAGTACTCGCAATCACATTGTCACCCCTAGCTCGACCCCACAAGATCTAATTCCGGATACTGAAAATCTTATAGGCAACGACGAAGATTTCGTGGTTATTGAATTAGGTAGTGGCACTGATCGAAGATTGAGCCAAGGGGAATCAATTAGTCCTTCTCCATTGAAAAAGTTGGAGCATAGAGTAAGTATCATGGGTACAAAAAAGGGCATGAAGTTTGGAAAAATTACAAGTATGGGTGATGAGTGTATCAGTAGAGAAAAGGATGAACAATTTTCAGTTCAACCGATTAGACGGTCGTTTTCAATGGATTCTTCTGCTAATAGAGAGCTTTACTTGGCAGTCAAAGAGGCTTTGCAGAAAGGGAATGCTAGACAAGGTATCGATCACGGCAATCATGATGATGAGGTAATTAGTCCGATCGAAGGTTGCAGTAATTATAGATCGGTCGGTCAGAAGAGCTTTCCTTTTCTTTCGGACATGGTAGAAGAGGATCAAGAAGTACAACTACTGCGGTTTTACCTGTTTATTTCGAGCATTGAATTCATGAGTTAA 978 42.13 MDFPIIAIAIIGIFATAFLLLSYYLFVIKCCLNWHRADLFHRFSLSRRRSEPFILPHYPALPQSRGLDELVIRSIPIFKYKKSSSSSSFSSNECECAVCLNEFQEDDKLRVIPNCSHVFHIDCIDVWLQTNANCPLCRTSISSTRNHIVTPSSTPQDLIPDTENLIGNDEDFVVIELGSGTDRRLSQGESISPSPLKKLEHRVSIMGTKKGMKFGKITSMGDECISREKDEQFSVQPIRRSFSMDSSANRELYLAVKEALQKGNARQGIDHGNHDDEVISPIEGCSNYRSVGQKSFPFLSDMVEEDQEVQLLRFYLFISSIEFMS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 740503 741480 - Conep15aG0015900.1 Cone15ag0155 453283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0155 325 CDD RING-H2_EL5-like 95 138 - -
Cone15ag0155 325 SUPERFAMILY RING/U-box 75 145 - -
Cone15ag0155 325 SMART ring_2 96 137 IPR001841 -
Cone15ag0155 325 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Cone15ag0155 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 144 IPR013083 -
Cone15ag0155 325 Pfam Ring finger domain 95 138 IPR001841 -
Cone15ag0155 325 PANTHER RING-H2 FINGER PROTEIN ATL16 2 301 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Cone15ag0155 325 FunFam E3 ubiquitin-protein ligase ATL6 59 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0155 Cone-Chr15:740503 Cone7ag0422 Cone-Chr7:1873731 5.34E-23 dispersed
Cone1ag0667 Cone-Chr1:6280910 Cone15ag0155 Cone-Chr15:740503 2.75E-24 transposed
Cone14ag0146 Cone-Chr14:703179 Cone15ag0155 Cone-Chr15:740503 2.87E-175 wgd
Cone15ag0155 Cone-Chr15:740503 Cone4ag0321 Cone-Chr4:1453040 6.26E-88 wgd
Cone15ag0155 Cone-Chr15:740503 Cone7ag0316 Cone-Chr7:1371004 3.77E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0155 - - - 0.0