Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0188 ATGAATTGCTCGATTTCCGGTGAGGTTCCGGAAGAACCAGTGGTCTCGAAGAAGTCCGGGCTACTATATGAGAAGCGTTTAATCGAGAGGCACATCCTGGACTATGGCAAATGCCCAGTCAGCGGTGAGCCACTTTCCATGGATGAGATTGTTCCAATCAAAACTGGAAAGATAGTGAAGCCGAGGCCGGTACAGGCTGCTAGCATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGGGTTAATGCTATCTAATTTTGCCCTGGAGCAACAACTGCATACAGCAAGACAAGAGCTAAGTCATGCCTTATACCAGCATGATGCTGCCTGTCGCGTTATTGCAAGGCTTAGAAAAGAAAGGGATGAGGCAAGGACATTACTTGCTCAGGCAGAGAGACAGATGCCGATATCAGCATCAACTGCAATTTCAGGAGATTCTTCCATATACCCTAATGGGAAAAGAGCTGCTGAGGATGAGGACTTGGGCCCTGATGGAAAGAGAATACGTCCTGGAATTTCTGCTGCAATTATTTCTGAGCTGACTGATTGTAATGCTGCTCTGTCTCAGACACGGAAGAAGCGGCAGATAGCAGCAACATTGGCTCCTGTTGAGGCTTTGGAAAGCTACACGCAGATATCAAGTCATCCCCTTCATAAAACTAGCAAACCAGGCATTGCATCTCTTGACATCCATTATAACAAGGATATCATCGCTACTGGAGGGCTTGACGCAAATGCTGTAATTTTTGATTGGTCATCAGGGCAGATTTTATCGACACTCAGTGGCCATTCCAAGAAGGTCACTAGTTTGAAATTTGTGGCTCAGGATGATTTTTTCTTAACCAGTTCAGCTGATAAGACTGTTCGTGTTTGGCAAGGAAATGATGATGGTAATTACAACTGTAGACATATCCTGAAAGATCATGCTGCTGAGGTGCAAGCTGTTACGGTGCATGCTACTAACAACTATTTTGTGACTGCATCCCTTGACAACACCTGGTGCTTTTACGAACTAGCCTCTGGTTTATGTCTGACACAGGTTGTGGACACATCAGGAACTGAGGGATACACATCTGCAGCTTTTCATCCTGATGGTCTTATCCTTGGCACAGGCACCTCAGAGGCGCTTGTCAAAATTTGGGACGTAAAAAGTCAGACAAATGTTGCTAGATTTGATGGACATGTTGGGCCGGTGACTGCCATATCCTTTTCTGAAAATGGTTACTTCCTTGCGACTGCAGCTCAGGATGGTGTCAAGCTGTGGGATCTACGCAAATTGAAGAACTTCCGCACGTTTTCCCCATATGATTCAGATACTCCCACAAATTCTGTGGCATTCGATCATAGCGGATGTTACCTCGCAGTAGCAGGTTCAGACATAAGAGTATACCAAGTTGCAAATGTGAAATCAGAATGGAACTGTATCAAGACTCTTCCAGATCTATCCGGCACAGGAAAAGCAATTTGTGCTAAATTCGGTCCAGATGCTAAATATCTTGCGGTGGGATCTATGGACCGAAATCTCCGGATCTTTGGCTTGCCCGAAGACGGCCCATCAGAGCCATAA 1572 45.61 MNCSISGEVPEEPVVSKKSGLLYEKRLIERHILDYGKCPVSGEPLSMDEIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLRKERDEARTLLAQAERQMPISASTAISGDSSIYPNGKRAAEDEDLGPDGKRIRPGISAAIISELTDCNAALSQTRKKRQIAATLAPVEALESYTQISSHPLHKTSKPGIASLDIHYNKDIIATGGLDANAVIFDWSSGQILSTLSGHSKKVTSLKFVAQDDFFLTSSADKTVRVWQGNDDGNYNCRHILKDHAAEVQAVTVHATNNYFVTASLDNTWCFYELASGLCLTQVVDTSGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQTNVARFDGHVGPVTAISFSENGYFLATAAQDGVKLWDLRKLKNFRTFSPYDSDTPTNSVAFDHSGCYLAVAGSDIRVYQVANVKSEWNCIKTLPDLSGTGKAICAKFGPDAKYLAVGSMDRNLRIFGLPEDGPSEP 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 890436 895010 + Conep15aG0019200.1 Cone15ag0188 453316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0188 523 FunFam Pre-mRNA-processing factor 19, putative 1 58 - -
Cone15ag0188 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 351 392 IPR001680 GO:0005515(InterPro)
Cone15ag0188 523 CDD WD40 226 513 - -
Cone15ag0188 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Cone15ag0188 523 Pfam Prp19/Pso4-like 66 131 IPR013915 -
Cone15ag0188 523 Coils Coil 115 135 - -
Cone15ag0188 523 SMART WD40_4 427 466 IPR001680 GO:0005515(InterPro)
Cone15ag0188 523 SMART WD40_4 342 383 IPR001680 GO:0005515(InterPro)
Cone15ag0188 523 SMART WD40_4 473 514 IPR001680 GO:0005515(InterPro)
Cone15ag0188 523 SMART WD40_4 210 252 IPR001680 GO:0005515(InterPro)
Cone15ag0188 523 SMART WD40_4 300 339 IPR001680 GO:0005515(InterPro)
Cone15ag0188 523 SMART WD40_4 386 424 IPR001680 GO:0005515(InterPro)
Cone15ag0188 523 SMART WD40_4 255 294 IPR001680 GO:0005515(InterPro)
Cone15ag0188 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Cone15ag0188 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515(InterPro)
Cone15ag0188 523 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 433 IPR001680 GO:0005515(InterPro)
Cone15ag0188 523 SMART Ubox_2 1 66 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone15ag0188 523 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone15ag0188 523 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 393 426 - -
Cone15ag0188 523 SUPERFAMILY WD40 repeat-like 217 513 IPR036322 GO:0005515(InterPro)
Cone15ag0188 523 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 516 IPR038959 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0004842(PANTHER)|GO:0005737(PANTHER)|GO:0006281(InterPro)|GO:0061630(InterPro)|GO:0071006(PANTHER)
Cone15ag0188 523 MobiDBLite consensus disorder prediction 143 167 - -
Cone15ag0188 523 CDD RING-Ubox_PRP19 1 54 - -
Cone15ag0188 523 Gene3D - 201 515 IPR015943 GO:0005515(InterPro)
Cone15ag0188 523 FunFam pre-mRNA-processing factor 19 199 515 - -
Cone15ag0188 523 SUPERFAMILY RING/U-box 1 53 - -
Cone15ag0188 523 Pfam WD domain, G-beta repeat 389 424 IPR001680 GO:0005515(InterPro)
Cone15ag0188 523 Pfam WD domain, G-beta repeat 475 513 IPR001680 GO:0005515(InterPro)
Cone15ag0188 523 Pfam WD domain, G-beta repeat 256 293 IPR001680 GO:0005515(InterPro)
Cone15ag0188 523 Pfam WD domain, G-beta repeat 302 338 IPR001680 GO:0005515(InterPro)
Cone15ag0188 523 Pfam WD domain, G-beta repeat 358 383 IPR001680 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0639 Cone-Chr12:5793465 Cone15ag0188 Cone-Chr15:890436 4.30E-08 transposed
Cone14ag0178 Cone-Chr14:830425 Cone15ag0188 Cone-Chr15:890436 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0188 K10599 - vvi:100249408 913.294