Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0211 ATGGTTCCATCATTCACTGATCATCATGATACTCATGAAGAGCTCTTTTCTCACAGATGCATATGGGCCAACGGGCCGGTCATAGTCGGAGCCGGACCATCGGGTTTAGCCGTTGCTGCCGCCCTTAAACAACAAGGTGTCCCATTCATTATCCTAGAAAGAGCCAACTGCATTGCTTCCCTTTGGCAAAGCCGTACTTACGATCGTCTGAAACTTCATCTCCCTAAACATTTTTGTCAACTGCCGAATTTTCCTTTCCCTGAAAATTTCCCGGAGTACCCCACCAAAAATCAATTCCTCAGCTACTTAGATTCCTATGCCAAGCACTTTGATATTAACCCGCAGTTCAATGAGACCGTTCAATCTGCTAAGTATGACGAAACTTTCGGCCTATGGCGGGTCAAAACCGTTTCAAAAAGTGGGCTGAAAGGGTATTCTGGCGAAGTTGAGTATATCTGCCGGTGGCTCGTGGTGGCCACCGGAGAGAATGCCGAGAAAGTGGTGCCGGAATTTGAAGGGTTGGAAGAGCATTTTGGTGGAAATGTCATTCATTCATGTGATTATAAGTGTGGTGAGAAGTATAGAGGTAAAAATGTACTGGTTGTTGGGTGTGGGAATTCAGGAATGGAGGTTTCTCTTGATCTTTGTAACTATAATGCTAGCCCATCCATGGTTGTTCGAAATTCGGTTCATGTTTTGCCAAGGGAGGTTCTCGGAAAATCAACATTCGATTTAGCCATTTCACTGATGAAAAGGTTTCCAATTAGGCTTGTTGACAAGATTCTACTGATGCTTGCGAGATTGATACTTGGAAATGTAGAAAAGTATGGTCTAAAACGGCCATCTATAGGCCCATTGGAGTTGAAGAACAGTGCTGGGAAGACTCCTGTTCTTGATATTGGTGCTTTGGATAAAATAAGGTCTGGCCAGATCAAAGTGGTCCCTGGAATCAAGAGGTTCTCTCCTGGAACTGTGGAGCTAATTAATGGCGAAAAGATTCTGATTGATTCTGTTGTTCTTGCAACTGGCTATCGCAGCAATGTTCCATCATGGCTAAAGGAGAATGAATTCTTTTCGAGCGACGGAATACCGAAAAACCCGTTTCCGAATGGATGGAAAGCCGGAAAGTCGGGTTTATATGCAGTTGGGTTCACGAGAAGAGGGCTATCTGGTGCATCATTAGATGCCATTAGTGTTGCACAGGACATCTCTAAGTGCTGGAAAGAAGATAACAAGCAGAAGAGGAAATCATTTGCTGCTCGCCATCGTCGATGCATCTCTCATTTCTAA 1290 44.34 MVPSFTDHHDTHEELFSHRCIWANGPVIVGAGPSGLAVAAALKQQGVPFIILERANCIASLWQSRTYDRLKLHLPKHFCQLPNFPFPENFPEYPTKNQFLSYLDSYAKHFDINPQFNETVQSAKYDETFGLWRVKTVSKSGLKGYSGEVEYICRWLVVATGENAEKVVPEFEGLEEHFGGNVIHSCDYKCGEKYRGKNVLVVGCGNSGMEVSLDLCNYNASPSMVVRNSVHVLPREVLGKSTFDLAISLMKRFPIRLVDKILLMLARLILGNVEKYGLKRPSIGPLELKNSAGKTPVLDIGALDKIRSGQIKVVPGIKRFSPGTVELINGEKILIDSVVLATGYRSNVPSWLKENEFFSSDGIPKNPFPNGWKAGKSGLYAVGFTRRGLSGASLDAISVAQDISKCWKEDNKQKRKSFAARHRRCISHF 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 993713 995320 + Conep15aG0021500.1 Cone15ag0211 453339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0211 429 PRINTS Pyridine nucleotide disulphide reductase class-II signature 25 47 - -
Cone15ag0211 429 PRINTS Pyridine nucleotide disulphide reductase class-II signature 194 218 - -
Cone15ag0211 429 PRINTS FAD-dependent pyridine nucleotide reductase signature 198 216 - -
Cone15ag0211 429 PRINTS FAD-dependent pyridine nucleotide reductase signature 26 45 - -
Cone15ag0211 429 PRINTS FAD-dependent pyridine nucleotide reductase signature 153 171 - -
Cone15ag0211 429 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 27 414 IPR050982 GO:0004497(PANTHER)|GO:0009851(PANTHER)|GO:0050660(PANTHER)
Cone15ag0211 429 FunFam Flavin-containing monooxygenase 26 412 - -
Cone15ag0211 429 Pfam Flavin-binding monooxygenase-like 28 349 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Cone15ag0211 429 SUPERFAMILY FAD/NAD(P)-binding domain 195 406 IPR036188 -
Cone15ag0211 429 SUPERFAMILY FAD/NAD(P)-binding domain 27 230 IPR036188 -
Cone15ag0211 429 Gene3D - 26 409 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0211 K11816 - - gmx:100818345 686.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0211 Cone-Chr15:993713 Cone17ag0651 Cone-Chr17:3866103 1.79E-212 dispersed
Cone15ag0211 Cone-Chr15:993713 Cone20ag0844 Cone-Chr20:6124757 1.31E-225 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g812 Blo01g00310 . . Bda08g00015 . . . . . . Cma06g01281 Cma14g01858 Car06g01100 Car14g01664 . Cpe08g00368 Cpe03g01556 Bhi01g00033 . . . . . . . . . . . . . . Cone15ag0211 . . Lsi05g01787 . . Cme06g00434 . . . . Bpe05g01121 . . . . Cmo06g01287 Cmo14g01903 . . . . . . . . . . . . . Cla05g00392 Cam05g0426 Cec05g0431 Cco05g0431 Clacu05g0422 Cmu05g0404 Cre05g0466 . Csa03g01149 Chy06g00414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000555 4 3 5 3 5 3 6 3 3 3 3 3 6 3 3 6 3 3 6 3 3 3 3 3 3 3 3 5 3 2 108