Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0220 ATGGCATCATTCATGGAAGATTTTCAAGCTAATCTTGACTCGTTGCCAAATATTCTTCAAAAGAAGTATGCTCTGTTGCACGATCTAGACAAAAGTTTACAGGGACTTATGAAACAGAACGAGCAACGGTGTGAAAAAGAGATAGAGGAAATAAAGCGGGGTGTGAAATCTGGAAACCTTACCCCGGATACTTCCCTTATCAGGTTCTCAGACGATGCTCTTGATGAGCAAAAGCATAGCCTTAGGATAGCTGATGAAAAGGTTGCTCTGGCTGTTCAGGCATATGATTTGGTAGATACCCACATACAGCAACTTGATCAATATTTGAAAAGATTCGATGAAGAGCTTAGACGTGAAAGAGATGGCGCTGCTGCAAGTGGGTTGGCAGCACCTAGTTCTGATAGTAACTTAAAATCTGGAAAGGTTAATGAAGGTGGTAGAGGAGGACGTAAAAAAACCCGCCAGGCAGCAGAAGTAGCGACAACAGCTGCAAATCCAATCGGAATGGAATTAGATTTACCAGTGGATCCAAATGAACCCACATATTGTTTCTGCAATCAAGTTAGCTTTGGGGAGATGATTGCTTGTGACAACCCTAATTGCAAGATAGAATGGTTTCATTTCGGGTGCGTTGGTTTGAAGGAACAACCGAGAGGAAAATGGTATTGCTCAGATTGTACCGTGACAAAAGTCCGCCGAAAAGGAAGATGA 711 42.48 MASFMEDFQANLDSLPNILQKKYALLHDLDKSLQGLMKQNEQRCEKEIEEIKRGVKSGNLTPDTSLIRFSDDALDEQKHSLRIADEKVALAVQAYDLVDTHIQQLDQYLKRFDEELRRERDGAAASGLAAPSSDSNLKSGKVNEGGRGGRKKTRQAAEVATTAANPIGMELDLPVDPNEPTYCFCNQVSFGEMIACDNPNCKIEWFHFGCVGLKEQPRGKWYCSDCTVTKVRRKGR 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1039889 1041776 - Conep15aG0022400.1 Cone15ag0220 453348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0220 236 CDD ING_plant 14 109 - -
Cone15ag0220 236 FunFam Inhibitor of growth 2b 174 230 - -
Cone15ag0220 236 CDD PHD_Yng1p_like 182 228 - -
Cone15ag0220 236 SMART PHD_3 182 227 IPR001965 -
Cone15ag0220 236 MobiDBLite consensus disorder prediction 122 159 - -
Cone15ag0220 236 SMART ING_2 4 112 IPR024610 -
Cone15ag0220 236 Pfam Inhibitor of growth proteins N-terminal histone-binding 5 112 IPR024610 -
Cone15ag0220 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 230 IPR013083 -
Cone15ag0220 236 PANTHER INHIBITOR OF GROWTH PROTEIN 4 127 IPR028651 GO:0005634(PANTHER)|GO:0035064(PANTHER)
Cone15ag0220 236 SUPERFAMILY FYVE/PHD zinc finger 170 231 IPR011011 -
Cone15ag0220 236 Pfam Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1 189 226 - -
Cone15ag0220 236 Gene3D - 1 109 - -
Cone15ag0220 236 ProSiteProfiles Zinc finger PHD-type profile. 180 229 IPR019787 -
Cone15ag0220 236 ProSitePatterns Zinc finger PHD-type signature. 183 226 IPR019786 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0220 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0220 Cone-Chr15:1039889 Cone15ag1003 Cone-Chr15:8132911 1.18E-34 dispersed
Cone14ag0202 Cone-Chr14:920845 Cone15ag0220 Cone-Chr15:1039889 2.20E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g829 . Blo12g00131 Bda03g01109 . Bpe04g01054 . Bma04g01035 . . . Cma06g01275 . Car06g01096 . . Cpe08g00372 . Bhi01g00022 . . . . . . . . . . . . . Cone14ag0202 Cone15ag0220 . . Lsi05g01798 . . Cme06g00422 . . . . . . . . . Cmo06g01284 . . . . . . . . . . . . . . Cla05g00384 Cam05g0418 Cec05g0423 Cco05g0423 Clacu05g0413 Cmu05g0396 Cre05g0458 . Csa03g01141 Chy06g00407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004676 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41