Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0226 ATGGAGGCTTCTTCTTTGGCTTTCATGGAGGACCTGTTGGATTTCTCGTCGGACATAGGCGAGGAAGATGATGAAGAAGATGGGCGGTCCAGAAAAGCTCTGCCTTATGAGCCACGTCACTCCGATGATCCTAGCCGTTCATTTCCTGAGCTTCCAGAAGAAGAGCTGGAGTGGCTATCTAACAAGGATGCCTTTCCGGCCGTTGAGACATTTGTCGACATACTTACCAGCCAACCCAATTATAAGATGTCAAAACATCATAGTCCGGTCTCTGTTTTAGACGACAGTTCTACAAGCAGCTCCTCCTTAACTTTAACGAGTTGCTGTGGCAACGTGAAAGTACCTGTCCGGGCAAGGAGCAAGCACAGACAGAGGCGGGCTCGAAACATGATTGGGCAAGAACGGTGGTTTAATCGAGTAGTTAATTTGAAGAATGCCAAGGTGGAATTGAAAGTGATGAGTAGTAATAATAATCGAAATAGCGGACCGAGTGGTGGTAGTACTACTGGGCGGAAGTGTCAGCATTGTGGAGCTGAGAAAACCCCGCAATGGCGGGCCGGGCCTCTTGGGCCAAAGACATTGTGTAATGCTTGTGGAGTGAGGTACAAGTCGGGCCGGTTGGTGCCCGAGTATAGACCCGCGAGTAGCCCAACTTTCTCGGTTGAGTTGCATTCTAATTCTCACAGAAAGGTGATGGAGATGAGGATGATGAAGCAGTTGGATAAAGGGTAG 732 48.91 MEASSLAFMEDLLDFSSDIGEEDDEEDGRSRKALPYEPRHSDDPSRSFPELPEEELEWLSNKDAFPAVETFVDILTSQPNYKMSKHHSPVSVLDDSSTSSSSLTLTSCCGNVKVPVRARSKHRQRRARNMIGQERWFNRVVNLKNAKVELKVMSSNNNRNSGPSGGSTTGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFSVELHSNSHRKVMEMRMMKQLDKG 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1059434 1061025 + Conep15aG0023000.1 Cone15ag0226 453354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0226 243 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 169 231 - -
Cone15ag0226 243 MobiDBLite consensus disorder prediction 154 174 - -
Cone15ag0226 243 ProSiteProfiles GATA-type zinc finger domain profile. 167 203 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0226 243 Pfam GATA zinc finger 173 207 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0226 243 MobiDBLite consensus disorder prediction 154 171 - -
Cone15ag0226 243 FunFam GATA transcription factor 164 243 - -
Cone15ag0226 243 SMART GATA_3 167 217 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0226 243 Gene3D - 168 239 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone15ag0226 243 ProSitePatterns GATA-type zinc finger domain. 173 198 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0226 243 PANTHER GATA TRANSCRIPTION FACTOR 9 239 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cone15ag0226 243 CDD ZnF_GATA 172 221 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag0226 243 MobiDBLite consensus disorder prediction 25 52 - -
Cone15ag0226 243 MobiDBLite consensus disorder prediction 16 52 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0226 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0226 Cone-Chr15:1059434 Cone17ag0146 Cone-Chr17:745532 5.08E-39 dispersed
Cone15ag0226 Cone-Chr15:1059434 Cone7ag0368 Cone-Chr7:1597065 1.50E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g838 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0226 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008616 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 0 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44825 PF00854 PTR2 2.90E-99 CL0015 Cone TF