Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0228 ATGTATGATTATATGCCGAATGGTAGTTTAGGTAGTCTTCTTCATGAGCGGACTGGAAATGTCTTAGAATGGGAGCTTAGATACCAAATTCTACTAGGTGCGGCTCAAGGGCTTTCTTATTTACACCATGATTGCATCCCTCCCATTGTTCATAGAGACATCAAGGCCAATAACATCCTCATTGGCCTTGAATTTGAGCCCTACATTGCTGATTTTGGTCTAGCCAAGCTTGTTGATGATGGTGATTTTGCTCGGTCCTCTAACACCATTGCCGGTTCCTATGGATATATTGCTCCTGAATATGGGTACATGATGAAGATTAGGGAGAAGAGTGATGTCTACAGTTACGGAGTGGTAGTACTAGAAGTCTTGACAGGGAAGCGACCGATTGATCCGACGATTCCAGATGGATTACATGTGGTAGATTGGGTGAAGAAGAAAAGAGGGATCGAAGTTATGGACACAGGCCTACTTTCAAGACCCGAGTCCGAAATAGAGGAGATGATGCAAGCACTAGGGATAGCCTTGTTGTGTGTAAACTCCTCTCCGGATGAGAGACCGACAATGAAAGATGTAGCGGCAATGTTTAAAGAAATCCGACACGATCAAAGAGAAGAGTTTGCTGAGGTTGATGTGCTTCTTAAGGGATCTCCTGTGAATAATTGCCGAGAAGATACAAATTCCGGCATCAGAGCTCCAGCTCTGATACCCGCGACATCGTCATCAAAGGTGATGGTGCATGGCTTGTACCAGAAAAGTAATAACACGAGCTTCTCAGCATCATCGCTGTTTCACTCATCTTCTTCCACTAGTGTCAAAAAAATGGGATTCAAATGA 837 43.97 MYDYMPNGSLGSLLHERTGNVLEWELRYQILLGAAQGLSYLHHDCIPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFARSSNTIAGSYGYIAPEYGYMMKIREKSDVYSYGVVVLEVLTGKRPIDPTIPDGLHVVDWVKKKRGIEVMDTGLLSRPESEIEEMMQALGIALLCVNSSPDERPTMKDVAAMFKEIRHDQREEFAEVDVLLKGSPVNNCREDTNSGIRAPALIPATSSSKVMVHGLYQKSNNTSFSASSLFHSSSSTSVKKMGFK 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1072242 1073183 - Conep15aG0023200.1 Cone15ag0228 453356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0228 278 ProSiteProfiles Protein kinase domain profile. 1 208 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0228 278 Gene3D Transferase(Phosphotransferase) domain 1 5 217 - -
Cone15ag0228 278 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 201 IPR051564 GO:0016020(PANTHER)
Cone15ag0228 278 SUPERFAMILY Protein kinase-like (PK-like) 2 210 IPR011009 -
Cone15ag0228 278 SMART serkin_6 3 196 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0228 278 Pfam Protein tyrosine and serine/threonine kinase 3 194 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag0228 278 ProSitePatterns Serine/Threonine protein kinases active-site signature. 49 61 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag0228 278 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 5 215 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0208 Cone-Chr14:966259 Cone15ag0228 Cone-Chr15:1072242 1.06E-168 dispersed
Cone15ag0228 Cone-Chr15:1072242 Cone4ag1513 Cone-Chr4:11756834 9.17E-82 dispersed
Cone14ag0207 Cone-Chr14:950468 Cone15ag0228 Cone-Chr15:1072242 1.86E-61 wgd
Cone15ag0228 Cone-Chr15:1072242 Cone4ag0382 Cone-Chr4:1733372 3.30E-22 wgd
Cone15ag0228 Cone-Chr15:1072242 Cone7ag0369 Cone-Chr7:1606393 6.31E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82126 PF02353 CMAS 8.30E-86 CL0063 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0228 - - - 0.0