Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0229 ATGTCTACAATGCCTACCTCGAGGCAGCTCTTCTCATTCCCTTCCATCTTCGTCTTCTTCTTCATTTCGCCTTCTTTCTCTAGAAACAATGAAGCTTCCCTCCTCTTCTCATGGCTTCACTCTGTTTCCTCTGTTTCTTCTTCTCCTCCTCCTTCCTTCTTCTCCAACTGGAACCTTCTCGACCCAGACCCATGTAAATGGACCGCCATTTCCTGCTCTCCTCAAAGCTTCGTTACAGAAATCAACATCCAATCCATCCCTTTAGAACTCCAACTCCCTTCAAATCTCTCTTTTCTCCACCATCTTCGCAAGCTCGTAATCTCTGACTCTAACCTGACCGGACCACTCCCTGCTGACATCGGCAACTGCCTGGAACTTAAAAGCATTGATTTAAGCTCAAACAGTCTTGTGGGTCCCATCCCTTCTAGTCTGGGAAAGCTTCAAAACCTTGAGGACTTGATTCTGAACTCAAATCAGCTGACTGGAAAAATTCCAGTTGAGATAACGGACTGCAAAAGTCTTAAGAATCTTTTGCTTTTCGATAACAGATTGAGTGGTAATCTTCCATCTGAGGTGGGGAAATTGAAGAATCTTCAAGTTCTTAGAGCAGGAGGGAATAAGGACATTGTGGGGGAAATTCCAGAGGAGATTGGAAACTGTTCGAACTTGAACGTCTTGGGCCTGGCCGATACTCGGATTTCGGGATCTTTGCCAGGCTCATTGGGCCGGCTCGGGAAGCTTCAAACTTTGTCAATTTACACTACAATGCTGTCTGGAGAAATCCCAGGTGAAATAGGTTACTGCTCTGAGCTCATCAACTTGTATCTTTACGAAAATAGCCTTTCCGGAACAATCCCGAATCAGCTCGGAAACCTTCAGAAACTAGAACAGTTGTTTCTGTGGCAGAATGGAATTGTTGGGTCGATCCCAGGAGAAATCTGTAATTGCACTAGCTTGAAAAGAATTGATCTTTCTTTGAATTCATTATCCGGGTCGATCCCATTGTCCATAGGAAACCTTTTCGAGCTAGAAGAGCTCATGTTAAGTGATAACAATATATCTGGATCTATACCATCTAACATCTCAAATGCTAAGAACTTGATTCAGTTACAGCTCGATACGAATCAGATTTCGGGTTTGATCCCGTCTGATATCGGTTCTCTGTCTAACCTCAATGTGTTTTTCGCCTGGGAGAATCAGCTAGAAGGAAGCATCCCTTCAAGTTTAGCTAATTGCTATAACCTACAAGCTTTGGATTTATCTCACAATGCTCTTACAGGTAGTATTCCTCCAGGTTTATTTTCCCTCCAAAATCTCACTAAGCTTTTGCTCATTTCGAATGATATTTCCGGTTCGATCCCATTAGAAATTGGTGATTGTAAATCTCTTGTCCGGCTTCGGCTAGGAGAGAATCGGATCAATGGAGAAATTCCGAGATCAATTGGGAATCTTAGCAGCTTGAACTTTCTAGATCTTTCTAGAAATCGTCTTTCTGGTCGGGTCCCGGATGAGATAGGAAGTTGCATGGAATTGCAAATGATTGACCTAAGCAACAACATTATCGACGGGTCCTTGCCTAACTCTATATCTTCTCTATCGGGCCTACAAGTATTGGACGTTTCTTCAAATCGGTTTTCAGGTCAAATCCCGGCTAGTTTGGGCCGTCTGGTTTCTCTGAACAAGCTCATTCTCTGTTCGAATTCATTTTCAGGAACAATTCCGTCTTCTCTATGCCTATGTTTGAGTCTACAGTTGCTTGATCTTAGTAGCAATCAACTTTCCGGACCCATCCCAGTTGAACTTGGTCTAATCGAAACTCTTGAGATTGCTCTCAATCTAAGTTGTAATGGGTTTACTGGTTCAGTCCCGGCTCAAATATCTTCACTCACCAAACTTTCGGTTCTAGACATTTCACATAACAATCTTGAAGGGGACTTAAAACCTCTTTCCAGGATCGATAATCTTGTCTCTCTTAACATCTCTCACAACAACTTCTCTGGTTACTTACCCGACAACAAGCTTTTCCGACAATTATCACCCATGGACCTAATCGGAAATGACGGTCTATGTTCCTTGATCCGAGATTCTTGTTTTGTAACCGATTCGGTTTGGCCTGGACTTGGAAGAAAAGGAAACGAACAATCAAGGAAACTCAAGCTAGCAATTGCATTTTTAACCGTCCTTACAGTTGCAATGATAGTTATGGGGATAATTGCGGTTGTTAGAGCAAGAACAACGATAGGAGATAATGATGATGATTCAGAGTTAGGAGAGACATGGCCTTGGCAGTTCACGCTGTTTCAAAAGTTTAACTTCTCGGTCAATCAAATACTAAGATGTCTAGTAGATTCTAACGTCATTGGAAAAGGGTGCTCTGGGGTGGTTTATCGGGCTGATATGGATGATGGGGAGGTGATTGCCGTGAAGAAGCTTTGGCCCACAGCAATAGCAGCAAGTCAAGACGATAGCAAAAGTGGGGTCCGAGATTCTTTCTCTGCCGAGGTGAAGACATTGGGTTCAATCCGTCATAAGAACATTGTTTGA 2544 43.0 MSTMPTSRQLFSFPSIFVFFFISPSFSRNNEASLLFSWLHSVSSVSSSPPPSFFSNWNLLDPDPCKWTAISCSPQSFVTEINIQSIPLELQLPSNLSFLHHLRKLVISDSNLTGPLPADIGNCLELKSIDLSSNSLVGPIPSSLGKLQNLEDLILNSNQLTGKIPVEITDCKSLKNLLLFDNRLSGNLPSEVGKLKNLQVLRAGGNKDIVGEIPEEIGNCSNLNVLGLADTRISGSLPGSLGRLGKLQTLSIYTTMLSGEIPGEIGYCSELINLYLYENSLSGTIPNQLGNLQKLEQLFLWQNGIVGSIPGEICNCTSLKRIDLSLNSLSGSIPLSIGNLFELEELMLSDNNISGSIPSNISNAKNLIQLQLDTNQISGLIPSDIGSLSNLNVFFAWENQLEGSIPSSLANCYNLQALDLSHNALTGSIPPGLFSLQNLTKLLLISNDISGSIPLEIGDCKSLVRLRLGENRINGEIPRSIGNLSSLNFLDLSRNRLSGRVPDEIGSCMELQMIDLSNNIIDGSLPNSISSLSGLQVLDVSSNRFSGQIPASLGRLVSLNKLILCSNSFSGTIPSSLCLCLSLQLLDLSSNQLSGPIPVELGLIETLEIALNLSCNGFTGSVPAQISSLTKLSVLDISHNNLEGDLKPLSRIDNLVSLNISHNNFSGYLPDNKLFRQLSPMDLIGNDGLCSLIRDSCFVTDSVWPGLGRKGNEQSRKLKLAIAFLTVLTVAMIVMGIIAVVRARTTIGDNDDDSELGETWPWQFTLFQKFNFSVNQILRCLVDSNVIGKGCSGVVYRADMDDGEVIAVKKLWPTAIAASQDDSKSGVRDSFSAEVKTLGSIRHKNIV 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1073223 1075766 - Conep15aG0023300.1 Cone15ag0229 453357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0229 847 Gene3D Ribonuclease Inhibitor 433 506 IPR032675 -
Cone15ag0229 847 Gene3D Ribonuclease Inhibitor 32 147 IPR032675 -
Cone15ag0229 847 FunFam Nuclear pore complex protein NUP107 28 188 - -
Cone15ag0229 847 ProSiteProfiles Protein kinase domain profile. 781 847 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag0229 847 SUPERFAMILY Protein kinase-like (PK-like) 763 847 IPR011009 -
Cone15ag0229 847 SUPERFAMILY L domain-like 45 382 - -
Cone15ag0229 847 Pfam Leucine rich repeat N-terminal domain 29 73 IPR013210 -
Cone15ag0229 847 Gene3D Ribonuclease Inhibitor 332 432 IPR032675 -
Cone15ag0229 847 Gene3D Ribonuclease Inhibitor 236 331 IPR032675 -
Cone15ag0229 847 Gene3D Ribonuclease Inhibitor 606 697 IPR032675 -
Cone15ag0229 847 Gene3D Ribonuclease Inhibitor 507 605 IPR032675 -
Cone15ag0229 847 Gene3D Ribonuclease Inhibitor 148 235 IPR032675 -
Cone15ag0229 847 PRINTS Leucine-rich repeat signature 629 642 - -
Cone15ag0229 847 PRINTS Leucine-rich repeat signature 415 428 - -
Cone15ag0229 847 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 414 701 - -
Cone15ag0229 847 SUPERFAMILY L domain-like 281 670 - -
Cone15ag0229 847 Gene3D Phosphorylase Kinase; domain 1 761 847 - -
Cone15ag0229 847 FunFam Predicted protein 189 287 - -
Cone15ag0229 847 Pfam Leucine Rich Repeat 271 292 IPR001611 GO:0005515(InterPro)
Cone15ag0229 847 Pfam Leucine Rich Repeat 462 484 IPR001611 GO:0005515(InterPro)
Cone15ag0229 847 Pfam Leucine Rich Repeat 318 340 IPR001611 GO:0005515(InterPro)
Cone15ag0229 847 Pfam Leucine Rich Repeat 654 671 IPR001611 GO:0005515(InterPro)
Cone15ag0229 847 Pfam Leucine Rich Repeat 535 556 IPR001611 GO:0005515(InterPro)
Cone15ag0229 847 Pfam Leucine Rich Repeat 343 363 IPR001611 GO:0005515(InterPro)
Cone15ag0229 847 Pfam Leucine Rich Repeat 511 532 IPR001611 GO:0005515(InterPro)
Cone15ag0229 847 Pfam Leucine Rich Repeat 414 436 IPR001611 GO:0005515(InterPro)
Cone15ag0229 847 Pfam Leucine Rich Repeat 582 602 IPR001611 GO:0005515(InterPro)
Cone15ag0229 847 Pfam Leucine Rich Repeat 486 508 IPR001611 GO:0005515(InterPro)
Cone15ag0229 847 Pfam Leucine Rich Repeat 366 388 IPR001611 GO:0005515(InterPro)
Cone15ag0229 847 Pfam Leucine Rich Repeat 101 123 IPR001611 GO:0005515(InterPro)
Cone15ag0229 847 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515(InterPro)
Cone15ag0229 847 ProSitePatterns Protein kinases ATP-binding region signature. 787 810 IPR017441 GO:0005524(InterPro)
Cone15ag0229 847 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 298 847 - -
Cone15ag0229 847 ProSiteProfiles Leucine-rich repeat profile. 414 436 IPR001611 GO:0005515(InterPro)
Cone15ag0229 847 SMART LRR_typ_2 532 556 IPR003591 -
Cone15ag0229 847 SMART LRR_typ_2 147 171 IPR003591 -
Cone15ag0229 847 SMART LRR_typ_2 629 659 IPR003591 -
Cone15ag0229 847 SMART LRR_typ_2 484 508 IPR003591 -
Cone15ag0229 847 SMART LRR_typ_2 412 436 IPR003591 -
Cone15ag0229 847 SMART LRR_typ_2 340 364 IPR003591 -
Cone15ag0229 847 SMART LRR_typ_2 292 316 IPR003591 -
Cone15ag0229 847 FunFam Leucine-rich receptor-like protein kinase family protein 309 406 - -
Cone15ag0229 847 SMART LRR_sd22_2 460 486 - -
Cone15ag0229 847 SMART LRR_sd22_2 292 311 - -
Cone15ag0229 847 SMART LRR_sd22_2 629 657 - -
Cone15ag0229 847 SMART LRR_sd22_2 340 363 - -
Cone15ag0229 847 SMART LRR_sd22_2 123 152 - -
Cone15ag0229 847 SMART LRR_sd22_2 508 534 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0229 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0229 Cone-Chr15:1073223 Cone4ag1513 Cone-Chr4:11756834 7.33E-24 dispersed
Cone15ag0229 Cone-Chr15:1073223 Cone14ag0208 Cone-Chr14:966259 7.06E-124 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g842 . . . . . . . . Cmo08g01007 . . . . . . . Cpe03g01568 . . . . . . . . . . . . . . Cone14ag0208 Cone15ag0229 . . . . . . . . . . . . . . . . . Cma08g01036 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000434 1 4 5 2 3 4 5 3 4 4 4 4 5 4 3 5 4 5 6 4 4 3 3 2 3 4 3 1 2 3 107