Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0230 ATGGGCCGGGCGGGTAAATGTAAAGCGTACAGTGCTAGCGGTTTAGGTTTCGCCGGGGAATCTGCAAAGAAAACACAGACGGAGGAGGTAAAGAGCGGGAAAATGGCTGCCGCCGCTGCTACGGCAGCTAGAGGTGGTGGTTTGGTCGTTCCACGGCCGGTGACATTTGTGACCGGAAACGCAAAGAAACTGGAAGAAGTTCGAACCATTTTGGGCAACTCCATCCCCTTTCAATCTCTCAAGGTCGACTTGCCAGAATTGCAAGGCGAGCCTGAAGAAATCTCCAAAGAGAAAGCTCGATTGGCTGCTTCTCAGGTAAATGGACCTGTGCTCGTAGAAGACACCTGCCTATGTTTCAATGCCCTAAAAGGTCTACCAGGTACATACAATTTCTTGTCATTTTGCAAAATACATAGGCCGGGATATGAAAATAAATCTTTTGTTAGGGGAAGATTGTTCCTGCAGGAGGCACTAATGATTTTGGATGGGATCCAATTTTTCAACCTGATTGATGGCTTTGATCAAACTTATGCTGAAATGCCCAGGGAAGAAAAGAACAAGATCTCACACCATTACAGGGCTCTTGCAAGAGCCCTGGTAAAAGCTCACTTTGCTGAAGCTGGTTATACTTTCCTGACAGACTCCTCCTCCCAAGAGTGA 660 47.27 MGRAGKCKAYSASGLGFAGESAKKTQTEEVKSGKMAAAAATAARGGGLVVPRPVTFVTGNAKKLEEVRTILGNSIPFQSLKVDLPELQGEPEEISKEKARLAASQVNGPVLVEDTCLCFNALKGLPGTYNFLSFCKIHRPGYENKSFVRGRLFLQEALMILDGIQFFNLIDGFDQTYAEMPREEKNKISHHYRALARALVKAHFAEAGYTFLTDSSSQE 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1076678 1078190 + Conep15aG0023400.1 Cone15ag0230 453358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0230 219 CDD HAM1 54 196 IPR002637 GO:0009143(InterPro)|GO:0047429(InterPro)
Cone15ag0230 219 Pfam Ham1 family 172 197 IPR002637 GO:0009143(InterPro)|GO:0047429(InterPro)
Cone15ag0230 219 Pfam Ham1 family 54 129 IPR002637 GO:0009143(InterPro)|GO:0047429(InterPro)
Cone15ag0230 219 SUPERFAMILY ITPase-like 52 197 IPR029001 -
Cone15ag0230 219 Gene3D - 48 135 IPR029001 -
Cone15ag0230 219 Gene3D - 163 203 IPR029001 -
Cone15ag0230 219 PANTHER INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN 170 211 IPR002637 GO:0005737(PANTHER)|GO:0009143(PANTHER)|GO:0009143(InterPro)|GO:0047429(InterPro)|GO:0047429(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0230 K01519 - - mdm:103453657 210.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0209 Cone-Chr14:972706 Cone15ag0230 Cone-Chr15:1076678 2.25E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g843 . . . . . . . . . . . Cma14g01871 . Car14g01673 . . Cpe03g01569 Bhi01g00003 . . . . . . . . . . . . . Cone14ag0209 Cone15ag0230 . . Lsi05g01811 . . Cme06g00411 . Blo07g00295 Bda11g00658 . . Bpe13g00533 . Bma06g01624 . . Cmo14g01917 . . . . . . . . . . . . . Cla05g00373 Cam05g0406 Cec05g0411 Cco05g0411 Clacu05g0401 Cmu05g0386 Cre05g0448 . Csa03g01129 Chy06g00396 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007514 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 35