Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0231 ATGGCGGCATTTTTTGGGAGAATAGATCGCTTCTGTCTTGTCGTGGTAATGATGCTGTTCTTCTTTTGTACAATGTCTGAAGCCCAGGTAAGGAAAACAGAGCTGTTACAGAGCTCGAGCAACTCAACGATGGCGATAAGAGGGCAAGAGGTTGAGGGTGATAAGAACGAGCATGCAGTGGATGATCCGGAAGCTATTGCAGCCATGGTGGACGTGAAAATACGTAACAGTACGGAAAGGAGAAACCTAGGATTCTTCTCGTGTGGGACCGGGAACCCGATCGATGATTGCTGGCGGTGCGATCCGAATTGGCAGAAAAACCGAAAACGTCTATCCGACTGTGGTATTGGGTTCGGTCGTAATGCCATAGGTGGCCGAGATGGTCGTTTCTATGTTGTTACCGACTCTCGGGACGATGACCCGGTGAACCCGGTACCGGGGACCCTACGGCATGCTGTGATCCAAGACGAGCCGTTATGGATCGTGTTCAAACGGGACATGGTCATACAATTGAAGCAAGAGTTGATCATGAATAGCTTCAAGACAATTGATGGGCGTGGGGTGAATGTTCACATTGCGAATGGAGCATGTCTTACAATACAATTTGTGACTAATGTGATCATACACGGTCTTCACATACATGATTGCAAGCCTACGGGGAATGCGATGGTGAGGAGCACACCGGAACATTATGGGTGGAGGACAATGGCTGATGGGGATGGGATCTCTATTTTTGGGTCTAGTCATATTTGGGTTGATCACAATTCTCTCTCCAATTGTGCCGATGGCCTTGTTGACGCCGTCATGGGGTCCACTGCCATCACCATCTCTAACAATCACTTCACCCACCATAACGAGGTGATATTGTTGGGTCATAGTGACACGTATACAAGAGACAAGCAAATGCAAGTGACCATTGCTTACAACCATTTTGGAGAGGGGCTTATCCAAAGAATGCCAAGGTGTAGACATGGGTATTTCCACGTGGTAAACAATGACTATACTCACTGGGAAATGTATGCAATTGGTGGGAGTGCGGACCCCACAATCAATAGCCAAGGAAACAGATATGCAGCTCCGACCAACCCTTTTGCTAAAGAGGTGACTAAGCGAGTTGAATCATCTGAGAGCAAGTGGAAGGGTTGGAACTGGAGATCTGAAGGAGACCTGTTGTTGAACGGCGCATACTTCACCCCGTCCGGTGCGGGGGCCTCGGCTAGTTACGCTCGAGCCTCAAGCTTGGGAGCTAAGTCTTCTTCCTTGGTCGGGACCATAACTTCTAATGCTGGTGCACTTGGTTGCAAGAGAGGGCATCAATGCTAG 1323 48.83 MAAFFGRIDRFCLVVVMMLFFFCTMSEAQVRKTELLQSSSNSTMAIRGQEVEGDKNEHAVDDPEAIAAMVDVKIRNSTERRNLGFFSCGTGNPIDDCWRCDPNWQKNRKRLSDCGIGFGRNAIGGRDGRFYVVTDSRDDDPVNPVPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDGRGVNVHIANGACLTIQFVTNVIIHGLHIHDCKPTGNAMVRSTPEHYGWRTMADGDGISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDTYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYAAPTNPFAKEVTKRVESSESKWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSLVGTITSNAGALGCKRGHQC 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1079114 1082213 - Conep15aG0023500.1 Cone15ag0231 453359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0231 440 SUPERFAMILY Pectin lyase-like 68 434 IPR011050 -
Cone15ag0231 440 Gene3D - 91 433 IPR012334 -
Cone15ag0231 440 FunFam Pectate lyase 91 433 - -
Cone15ag0231 440 PANTHER PECTATE LYASE 18-RELATED 20 437 IPR045032 GO:0030570(InterPro)
Cone15ag0231 440 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Cone15ag0231 440 PRINTS Pollen allergen Amb family signature 411 434 IPR018082 -
Cone15ag0231 440 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Cone15ag0231 440 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Cone15ag0231 440 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Cone15ag0231 440 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Cone15ag0231 440 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Cone15ag0231 440 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Cone15ag0231 440 SMART amb_all 166 363 IPR002022 -
Cone15ag0231 440 Pfam Pectate lyase 173 355 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1037 Cone-Chr11:8205776 Cone15ag0231 Cone-Chr15:1079114 2.00E-189 dispersed
Cone15ag0231 Cone-Chr15:1079114 Cone2ag0944 Cone-Chr2:35120894 8.10E-229 dispersed
Cone17ag0671 Cone-Chr17:4247745 Cone15ag0231 Cone-Chr15:1079114 1.07E-238 transposed
Cone14ag0210 Cone-Chr14:975609 Cone15ag0231 Cone-Chr15:1079114 5.10e-316 wgd
Cone15ag0231 Cone-Chr15:1079114 Cone4ag0383 Cone-Chr4:1736681 1.86E-262 wgd
Cone15ag0231 Cone-Chr15:1079114 Cone7ag0370 Cone-Chr7:1620380 1.68E-265 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0231 K01728 - rcu:8258025 766.533