Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0239 ATGACGACGACGATTATTGTTAATGGAGAGCTGAACAATGCAAGTGAAGAAGGCGCGCAATATGACTTTGATTTGTTTGTTATTGGAGCTGGAAGTGGTGGTGTTCGAGCTTCCAGATTTTCAGCTACTGCTGGGGCAAAGAAGGTTGGGATTTGTGAGCTTCCATTCGATCCAATCAGCTCTGAAGTAGTTGGAGGAATTGGTGGAACTTGTGTTATTCGCGGTTGTGTTCCAAAGAAGATTTTGGTGTATGGGGCGTCTTTTGCTTATGAGATTGAGGATGCAAGAAATTACGGTTGGGAACTGAATGAAAAGGTGGACTTCAACTGGAAGAAACTCTTGCAGAAGAAGACAGATGAAATAATCAGATTAAATGGAATTTACAAGCGTCTGCTGACAAATGCTGGGGTCAAAATGTATGAAGGAGAGGGAAAGATAGTTGGTCCGAATGAAGTTGAGGTGACCCAATTAGATGGAACTAAATTGCATTTTTCAGCAAAGCACATACTAATTGCTACAGGTGGTAGAGCTTATCGGCCTGATATCCCAGGGAAGGAGTTGGGGATAACCTCAGATGAGGCATTGAGTTTGGAGAAGTTACCTAAACGTGCTGTGGTGCTTGGAGGAGGGTATATTGCAGTTGAATTTGCTTCAATATGGCGTGGGATGGGTGTTGATGTGGATCTATGTTTCAGAAAGGAACTTCCGTTAAGAGGGTTTGATGATGAAATGAGAGCCGTGGTCGCAAGAAATCTTGAGGGGAAGGGAGTTAATTTGCACCCAAGGACAAACCTGACAGAGTTGGTCAAAACAGAGGACGGCATAAAATTTATTACAGATCATGGAGAAGAGTTGATAGCAGATGTTGTGCTGTTTGCAACTGGTCGTGTACCAAATACAAAGAGGTTAAACTTGGAAGCTGTTGGTGTTGAAGTTGATGCAACTGGTGCTGTGAAGGTAGATGAGTACTCACACACGAACATTCCTAGCATATGGGCTGTTGGTGATGTCACCAATAGATTGAACCTTACGCCTGTGGCCTTAATGGAGGGGACTTGCTTTGCTAAAACTGTTTTTGGTAACCAACCCACCAAACCAGACTACAGAGACGTACCCTGTGCTGTGTTTAGCATACCACCGCTCTCTGTTGTGGGCCTCAATGAAGAAGAGGCAATAGAGCAAGCAAGTGGTGATATATTGGTCTTCACATCGTCATTCAATCCAATGAAGAATACCATTTCAGGACGACAAGAAAAGACGGTTATGAAACTTGTAGTTGACGCCCAGACAGATCGAGTTCTTGGCGCGTCCATGTGTGGGCCAGATGCTCCTGAAGTTATACAGGGTATTGCTGTTGCACTGAAATGCGGAGCAACCAAGGCACAGTTTGATAGCACGATCGGAATTCATCCTTCTGCTGCAGAGGAATTTGTGACCATGCGATCGGTCACTAGACGCATCACAGCAACCGGAAAACCCAAGACGAATCTATAG 1494 44.51 MTTTIIVNGELNNASEEGAQYDFDLFVIGAGSGGVRASRFSATAGAKKVGICELPFDPISSEVVGGIGGTCVIRGCVPKKILVYGASFAYEIEDARNYGWELNEKVDFNWKKLLQKKTDEIIRLNGIYKRLLTNAGVKMYEGEGKIVGPNEVEVTQLDGTKLHFSAKHILIATGGRAYRPDIPGKELGITSDEALSLEKLPKRAVVLGGGYIAVEFASIWRGMGVDVDLCFRKELPLRGFDDEMRAVVARNLEGKGVNLHPRTNLTELVKTEDGIKFITDHGEELIADVVLFATGRVPNTKRLNLEAVGVEVDATGAVKVDEYSHTNIPSIWAVGDVTNRLNLTPVALMEGTCFAKTVFGNQPTKPDYRDVPCAVFSIPPLSVVGLNEEEAIEQASGDILVFTSSFNPMKNTISGRQEKTVMKLVVDAQTDRVLGASMCGPDAPEVIQGIAVALKCGATKAQFDSTIGIHPSAAEEFVTMRSVTRRITATGKPKTNL 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1126291 1130850 + Conep15aG0024400.1 Cone15ag0239 453367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0239 497 Pfam Pyridine nucleotide-disulphide oxidoreductase 23 351 IPR023753 GO:0016491(InterPro)
Cone15ag0239 497 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 368 484 IPR016156 -
Cone15ag0239 497 PANTHER GLUTATHIONE REDUCTASE 13 487 IPR046952 GO:0004362(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006749(PANTHER)|GO:0034599(PANTHER)|GO:0045454(InterPro)|GO:0045454(PANTHER)|GO:0050660(PANTHER)|GO:0050660(InterPro)
Cone15ag0239 497 FunFam Glutathione reductase 370 496 - -
Cone15ag0239 497 Gene3D - 370 496 IPR016156 -
Cone15ag0239 497 SUPERFAMILY FAD/NAD(P)-binding domain 22 342 IPR036188 -
Cone15ag0239 497 Gene3D - 186 304 IPR036188 -
Cone15ag0239 497 FunFam Glutathione reductase 186 304 - -
Cone15ag0239 497 PRINTS FAD-dependent pyridine nucleotide reductase signature 166 184 - -
Cone15ag0239 497 PRINTS FAD-dependent pyridine nucleotide reductase signature 203 221 - -
Cone15ag0239 497 PRINTS FAD-dependent pyridine nucleotide reductase signature 25 44 - -
Cone15ag0239 497 PRINTS FAD-dependent pyridine nucleotide reductase signature 316 338 - -
Cone15ag0239 497 PRINTS FAD-dependent pyridine nucleotide reductase signature 287 303 - -
Cone15ag0239 497 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 371 480 IPR004099 -
Cone15ag0239 497 Gene3D - 23 360 IPR036188 -
Cone15ag0239 497 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 68 78 IPR012999 GO:0016668(InterPro)
Cone15ag0239 497 PRINTS Pyridine nucleotide disulphide reductase class-I signature 455 475 - -
Cone15ag0239 497 PRINTS Pyridine nucleotide disulphide reductase class-I signature 367 388 - -
Cone15ag0239 497 PRINTS Pyridine nucleotide disulphide reductase class-I signature 203 228 - -
Cone15ag0239 497 PRINTS Pyridine nucleotide disulphide reductase class-I signature 288 302 - -
Cone15ag0239 497 PRINTS Pyridine nucleotide disulphide reductase class-I signature 67 82 - -
Cone15ag0239 497 PRINTS Pyridine nucleotide disulphide reductase class-I signature 433 448 - -
Cone15ag0239 497 PRINTS Pyridine nucleotide disulphide reductase class-I signature 331 338 - -
Cone15ag0239 497 PRINTS Pyridine nucleotide disulphide reductase class-I signature 24 46 - -
Cone15ag0239 497 PRINTS Pyridine nucleotide disulphide reductase class-I signature 169 178 - -
Cone15ag0239 497 NCBIfam glutathione-disulfide reductase 21 481 IPR006324 GO:0004362(InterPro)|GO:0006749(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Cone15ag0239 497 PIRSF Hg-II_reductase_MerA 5 471 IPR001100 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0239 K00383 - - mdm:103443500 854.744
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0239 Cone-Chr15:1126291 Cone9ag0805 Cone-Chr9:3866289 3.54E-10 dispersed
Cone17ag0592 Cone-Chr17:3130588 Cone15ag0239 Cone-Chr15:1126291 2.91E-173 transposed
Cone14ag0222 Cone-Chr14:1023399 Cone15ag0239 Cone-Chr15:1126291 0 wgd
Cone15ag0239 Cone-Chr15:1126291 Cone4ag0391 Cone-Chr4:1777033 2.31E-304 wgd
Cone15ag0239 Cone-Chr15:1126291 Cone7ag0381 Cone-Chr7:1670459 6.90E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g863 . . Bda03g01152 . . Bpe14g01304 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0222 Cone15ag0239 . . . . . . . . . . . . Bma02g00735 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004411 1 2 2 1 1 1 2 1 1 1 1 1 2 1 1 3 1 4 2 1 1 1 1 1 1 2 1 1 3 1 43