Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag0246 ATGGACAATTTTCATCGCTTAACCGATCATCCCATGCAAAATCAGCAACAGCCCCTTGACTCTTATTATTTTCCACATCTGCCCGCAAGAGCAACGATTCTTGACAATCAAGTCCATCCAACATCCCTTGAATCAAACTTGATGATGACTCCTCTAAATTTCCTAGAGACCTTCCCACAGAAACTCACCTCATCATCTCAATCACTCTCCAACCCTCCTCCTCCTCCTAACCTTACCCTGTTTTTCCAACAACCCGATTACAACAATCATCATCATCATCATCATCTTCAATTAGGAATCATGAAAACACAGAAAATGAAGCTAATCAGTGGAAGATCATCATCATCATCAGCAGCAGCAGCAATGGCGTCATCTTCAAATTCAAGAGGGAAGTTGTTTAGAGGAGTGAGGCAGAGGCATTGGGGCAAATGGGTGGCGGAAATAAGGTTGCCTAGAAACAGGACAAGGGTTTGGCTAGGAACTTTCAACACAGCAGAGGAGGCTGCTTTTGCTTACGATACAGCTGCTTACATGCTAAGAGGAGAGTATGCTAATTTGAATTTTCCCCATCTTAAGGGTGAGTTGATTAACAAGGCAGGTGGGTTGAATCAGCCCACAATTGCTCTTCTTGAGGCCAAAATGCAAGCAATGAAACAGAAGAAGGAAGTTGGGTTTGATGATGAGGATATGGGATTTTTGCATCTGAGGAAGAACAGAGGGGGAGGTAAGATGTTGGATGAGGTGAAGAAAACAGAGCAGGAGGAGGAGGTGGTGGATGCTGTTCATCAGATAAGTAGAATGCCTTCGTTAGATATAGATATTATTTGGGATGCTCTCTTAGTCCCTAATTCTGCTTCTTCTTCTTCATCATCATCATGA 879 43.12 MDNFHRLTDHPMQNQQQPLDSYYFPHLPARATILDNQVHPTSLESNLMMTPLNFLETFPQKLTSSSQSLSNPPPPPNLTLFFQQPDYNNHHHHHHLQLGIMKTQKMKLISGRSSSSSAAAAMASSSNSRGKLFRGVRQRHWGKWVAEIRLPRNRTRVWLGTFNTAEEAAFAYDTAAYMLRGEYANLNFPHLKGELINKAGGLNQPTIALLEAKMQAMKQKKEVGFDDEDMGFLHLRKNRGGGKMLDEVKKTEQEEEVVDAVHQISRMPSLDIDIIWDALLVPNSASSSSSSS 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1160793 1161671 - Conep15aG0025100.1 Cone15ag0246 453374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag0246 292 Gene3D AP2/ERF domain 132 190 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag0246 292 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 56 279 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone15ag0246 292 CDD AP2 131 191 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag0246 292 ProSiteProfiles AP2/ERF domain profile. 132 189 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag0246 292 SUPERFAMILY DNA-binding domain 132 190 IPR016177 GO:0003677(InterPro)
Cone15ag0246 292 SMART rav1_2 132 195 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag0246 292 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag0246 292 PRINTS Ethylene responsive element binding protein signature 155 171 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone15ag0246 292 FunFam Ethylene-responsive transcription factor 2 131 190 - -
Cone15ag0246 292 Pfam AP2 domain 133 181 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0246 Cone-Chr15:1160793 Cone17ag1230 Cone-Chr17:8918498 3.54E-33 dispersed
Cone14ag0228 Cone-Chr14:1064666 Cone15ag0246 Cone-Chr15:1160793 4.87E-134 wgd
Cone15ag0246 Cone-Chr15:1160793 Cone4ag0408 Cone-Chr4:1847318 7.68E-46 wgd
Cone15ag0246 Cone-Chr15:1160793 Cone6ag0649 Cone-Chr6:3279735 1.16E-18 wgd
Cone15ag0246 Cone-Chr15:1160793 Cone7ag0394 Cone-Chr7:1756379 1.06E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44826 PF02309 AUX_IAA 8.60E-62 CL0072 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag0246 - - - 0.0